Shewanella psychrophila: Sps_04103
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Entry
Sps_04103 CDS
T05063
Name
(GenBank) tRNA pseudouridine synthase, TruD family
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spsw03016
]
Sps_04103
Enzymes [BR:
spsw01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Sps_04103
Transfer RNA biogenesis [BR:
spsw03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sps_04103
Prokaryotic type
Sps_04103
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
SLC35F
Motif
Other DBs
NCBI-ProteinID:
AQS39209
UniProt:
A0A1S6HUP8
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All DBs
Position
complement(4662093..4663172)
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AA seq
359 aa
AA seq
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MIELHYLHGKPASKADLRTQNSDFIVQEILPFGPTGEGEHHLLHIRKEGLNTADVAKILS
GFAHVHPKEVTYAGQKDKNAITEQWFGVRIPGKETPEWASLNCDELTILSSHRHSKKLRI
GALAGNRFCLTLRNITDMQDVLARLALVKETGVPNYFGEQRFGHDGKNLVFGRQMFTGRK
VKDRKKRSMYLSAVRSYLFNFVTSSRLAEYGLEKLNGDSVMLAGSRSYFVAELWDDALLK
RLNEKDIQLSAPMWGRGAALPQGEAADFEAKALAEFDADRDGLEHAGLEQERRPLLLEPQ
HLSYEVEGDDVIIIKFALPSGSFATSVLRELFDYEDVREREFRQRQLERREQEQANSIV
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgatagaactgcattatttgcacgggaaaccagcatcgaaggccgaccttcgtacacaa
aatagcgatttcattgttcaggaaattttgcctttcggtccgacgggggagggagaacat
caccttcttcatatccgtaaagaggggctcaataccgccgatgtggctaagatattatct
ggttttgcccatgttcatcctaaagaggtgacctatgcgggtcagaaggataagaatgcg
atcactgagcagtggtttggcgtacgtattcccggtaaagagaccccggaatgggccagc
ttaaattgtgatgagttgactatcttgtctagtcatcgtcacagtaaaaagctgagaata
ggtgccttagcgggtaaccgcttctgtttaactttgcgtaatattaccgatatgcaagat
gtgcttgctagattagcgctagtaaaagagactggggtgcctaattatttcggtgagcaa
aggtttggtcatgatggcaagaacctagtcttcggtcgacagatgtttactggtcgtaag
gtgaaagacaggaagaagcgcagcatgtatctatctgctgttcgatcttatctgttcaat
ttcgtcacttcctctagattggccgaatatggccttgaaaagctcaacggtgacagtgtc
atgttagcgggcagtcgaagctattttgttgccgagctatgggatgatgcgttacttaag
cgtcttaatgaaaaagatatccaactgtcggcacctatgtggggcagaggagcggcattg
ccccaaggtgaggcggcagattttgaggctaaggcgttggctgagtttgatgcggaccgt
gatggattagaacatgcgggattagagcaagagcgccgcccgctgttgttagaacctcaa
catttatcctatgaggttgaaggagacgatgtgattatcattaaatttgcactgccttcg
ggaagtttcgcaacttccgtgctgcgagaactatttgattatgaagatgtcagagaacgg
gaatttcgccaacgtcaattagagcggcgtgagcaagaacaggctaattcaatcgtttag
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