Shewanella psychrophila: Sps_04111
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Entry
Sps_04111 CDS
T05063
Name
(GenBank) 23S rRNA m(5)U-1939 methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spsw03009
]
Sps_04111
Enzymes [BR:
spsw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Sps_04111
Ribosome biogenesis [BR:
spsw03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Sps_04111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
TRAM
Methyltransf_11
PCMT
MTS
Methyltransf_15
Methyltransf_23
RrnaAD
Cons_hypoth95
Methyltrans_SAM
Methyltransf_4
PrmA
FtsJ
RMMBL
GARS_N
PAXX
N6_N4_Mtase
Ubie_methyltran
DNA_methylase
TPMT
Motif
Other DBs
NCBI-ProteinID:
AQS39217
UniProt:
A0A1S6HUI7
LinkDB
All DBs
Position
complement(4671346..4672701)
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AA seq
451 aa
AA seq
DB search
MAQFFKAKPNRSKQVSARMSLEITQLDHLGAGIAHHDGKIVFVPGALPGESVRGQLTEQK
KRHARAKLQEIVRASQDRVTPKCAHYYQCGGCDLQHLAIDKQRSHKQDSLVSLMAKLGQA
EAETIAPVLFGKEWDYRRRARLATFYDRNTKHTTLGFRAQASKQVINIEHCPVLAAPLSD
LILPLSRVLNRLSSKKALGHVELIEASNGHFVVIRTTKSMSEKDTEKLREFSDSHKVNLI
VQGNESDLTLICDDPHTLAIGSSELPYYELDNEIKLSFTPGNFVQVNAEINNAMVNQAVD
WLSVETNERVLDLFCGVGNFSLPLAKKGAEVIGVEGVPEMVQQASINAKLNGVNNVSFFH
TDLSADLSKASWLGKVDKLLLDPARAGAFESLQWLKKMKPKSIVYVSCDPASLARDSEYL
LKHGYKLTKLGLIDMFPQTHHIEAMALFELS
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcacagttttttaaagcaaaaccaaatagatctaagcaagtatcagccagaatgagc
ttagagatcacccagctcgatcatttaggtgcgggaattgctcatcatgatggcaaaatt
gtctttgtaccgggggctttaccgggagaaagtgtaagagggcaattgaccgagcagaag
aagcgtcacgctcgtgctaaattgcaagagattgtcagagcatcccaagatcgagtcacg
cccaaatgtgcccattattaccagtgtggtggttgtgatttacaacatctagctatcgat
aaacagcgtagccataaacaagatagtttggtcagtcttatggctaagctaggtcaggct
gaagcagagacgatagcaccagtactgtttggtaaggaatgggattatcgacgccgggcc
agactcgctactttttatgatagaaatactaaacacaccactttaggtttcagggctcag
gcgagtaagcaagtcattaacatcgagcattgtcctgtgcttgcggcccccctgtcagat
ttaatcttgcctttatctcgtgtgttaaatcgactctcgagtaagaaggccttgggtcac
gtggaactaatcgaagccagtaatggtcattttgtcgttatcaggacgacaaaatccatg
tcggaaaaagacaccgaaaagttacgagaattttccgacagtcacaaagtgaacttgata
gtacaaggtaatgaatctgacttaaccttgatctgtgatgatccacacaccttggccatt
ggctcaagtgagctgccctattatgaactggataatgaaataaagttaagttttactccg
ggtaattttgttcaggtcaatgccgaaatcaataatgccatggtgaaccaagccgtggac
tggttatccgttgaaaccaatgagcgggtgctagacctcttctgcggcgttgggaatttt
agcctgccattggccaagaaaggcgccgaggtgataggcgttgaaggtgtgcctgaaatg
gtgcaacaagccagcatcaatgccaagctgaatggggttaataatgtgtcttttttccat
accgatctcagcgccgatctctcaaaggcttcctggctcggtaaggtggataaattgctt
ctagatccggccagagccggggctttcgagagtctgcaatggctgaagaaaatgaaacct
aaatccattgtttatgtttcatgtgatccggcgagtctggcacgagacagtgagtatctg
ttaaaacatggttacaagttaactaaattgggtttgatcgatatgtttcctcaaactcat
cacatcgaagccatggcattgtttgaattgagttaa
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