Shewanella psychrophila: Sps_04176
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Entry
Sps_04176 CDS
T05063
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sps_04176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsw03019
]
Sps_04176
Enzymes [BR:
spsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sps_04176
Messenger RNA biogenesis [BR:
spsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sps_04176
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AQS39282
UniProt:
A0A1S6HUX3
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All DBs
Position
complement(4749163..4750455)
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AA seq
430 aa
AA seq
DB search
MKFDALDLNPLLIDAIDKCGYQQLTQVQSEVIPVALSGADLMACAETGTGKTASFALPLL
ERLLKEENESPRLRGLILTPTRELAIQVAENITRYGQFTSLKTLAVYGGANMNPQRKALN
AGVDILVATPGRLFDFVGQHGLDLSDVTSLIIDEADRMLDMGFVRDIERVKSLVAPEHLT
HFFSATYSDEVKLLAEKMLTAPQWINVAQTRSAASVEQEIYLVDKRRKAELLSELIGRNN
WQQVLVFATTKESAEHLKNELTLDGIKCGVFHGDRTQGARNRTLEEFKSGKLRVMVATDV
AARGIDIQALPLVINLELPYGAEDYIHRVGRTGRAGLTGRAISFVCPSDEEMLDEIESLI
ELKLPRIVLPGYELGAPLPARYRENQDLTTTKKKFERRKGKPANKHKGKPKSNADGAKSS
YASRRTDKKR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgacgccctcgacttgaaccccttattgatagatgccatcgataaatgtggt
tatcagcaactcacacaggttcagtctgaggttataccggttgccttatctggcgccgat
cttatggcgtgtgccgaaaccggaacaggtaagacggcttcatttgccttgcctctgtta
gaacgtctactcaaagaagaaaatgagtctcctcgtctacgtgggctgatcctgacacct
acccgagagttggctattcaagtggccgagaatatcactcgctatggtcagtttaccagt
ctaaagacattagccgtttatggtggggctaatatgaatcctcagcgtaaggcattgaat
gcaggggtcgatattctagtggcaacaccgggtcgattgttcgattttgttgggcagcac
ggactcgatttatctgatgttaccagccttatcatagatgaagctgatagaatgttggac
atgggttttgtccgcgatatcgagagagtcaagtctctggtagcaccagagcatttaact
cattttttctcggcgacttatagtgacgaagtcaagctgttagccgagaagatgctgacc
gctccccaatggattaatgtcgctcagacacgctctgccgctagcgttgagcaggagatc
tacctggtcgataagcgtcgtaaagccgagctactctctgaattaataggccgtaacaac
tggcagcaggtattagtctttgcgacaaccaaggagagcgccgagcatcttaagaatgag
ttgaccctagacggtatcaagtgcggcgtgtttcatggtgacagaactcaaggggcgaga
aatcgtactctagaggaatttaagtcgggtaagctgcgggtcatggtggctactgatgtg
gcggcgcgaggcatagatatccaagccttgcctctggtgatcaatctcgaactaccttat
ggagccgaggattatattcaccgggtaggtcgtactggtcgcgcaggcttaaccgggcgg
gctatctcctttgtctgtccatccgatgaggagatgctcgatgagattgagagtttgatt
gagcttaagttgccacgcatcgttctgcctgggtacgaacttggcgcgcctttgccggct
cgatatcgtgagaaccaagatctgactacgaccaagaagaaatttgaacgacgtaaagga
aagcctgccaataaacataagggcaaacctaagagcaacgccgatggcgctaagtcgagc
tatgctagccgtcgaacggataagaagcgttaa
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