Shewanella psychrophila: Sps_04245
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Entry
Sps_04245 CDS
T05063
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spsw03016
]
Sps_04245
Enzymes [BR:
spsw01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Sps_04245
Transfer RNA biogenesis [BR:
spsw03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sps_04245
Prokaryotic type
Sps_04245
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AQS39350
UniProt:
A0A1S6HUW7
LinkDB
All DBs
Position
complement(4832198..4833160)
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AA seq
320 aa
AA seq
DB search
MGRRQRGRFIDGILLLDKETGMSSNFALQRVKRLFDANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGVRTDTSDSDGEVVQTRPLDFTQDLLMESLEYFRGDTMQ
VPSMYSALKHKGQPLYKYAREGIEVPREARPITVFELNFISLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVADYPYDRIVSLTQLNEMVEKAEAQDLDAKAILDELL
LPMDTAVSKFQEINLADTVAPYLMNGNPVQNPGSCELADGELVRITIGEEHKFVGIGAIN
DDGLLAPKRLIVLREPLETA
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtcgtcagcgcggtcgcttcatcgatgggatcctgctcttggacaaagagact
gggatgagttcgaactttgctctgcaaagggttaagcgacttttcgatgccaataaagcg
ggccatactggcgccttagatcctttagccacaggtatgttacccatatgcctaggtgaa
gctaccaagttttctcagcatcttctcgatgctgataagcgctatttggtcacggctaaa
cttggtgtgcgcaccgatacaagtgattctgatggtgaagtggtacagacccgccctctg
gattttacccaagacttactgatggagtctttggagtattttcgtggcgataccatgcag
gtgccttcgatgtattcggcgctaaagcataagggacagcccctgtacaaatatgcccga
gaaggcatcgaagtacccagagaagctagacctatcacggtattcgaactgaattttatc
tctttagaaggggatgagctgaccttagacatacattgttctaagggaacctacattcgt
accattacagatgatctcggtgaaatgttggggtgtggtgctcatgtgatcatgctcaga
cgcactcaagtcgctgactacccttatgatcgcattgtaagtttaactcagttaaatgag
atggttgaaaaagctgaagcccaagatctagatgcgaaagctattctagatgagctattg
ctgcctatggatacagctgtcagtaagtttcaagaaattaacttagctgacacagttgca
ccttatctaatgaacggtaatccagttcaaaacccaggtagctgtgagctagctgatgga
gagctggtacggatcactattggcgaagaacacaagtttgttggtataggtgcaatcaat
gatgacggtctgctggcacctaagcgactcatcgttcttagagaacccttagaaaccgct
tag
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