Shewanella psychrophila: Sps_04973
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Entry
Sps_04973 CDS
T05063
Name
(GenBank) penicillin-binding protein 1B
KO
K05365
penicillin-binding protein 1B [EC:
2.4.99.28
3.4.16.4
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw00550
Peptidoglycan biosynthesis
spsw01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Sps_04973
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
spsw01003
]
Sps_04973
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Sps_04973
Enzymes [BR:
spsw01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
Sps_04973
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Sps_04973
Glycosyltransferases [BR:
spsw01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
Sps_04973
Peptidoglycan biosynthesis and degradation proteins [BR:
spsw01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
Sps_04973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
UB2H
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
AQS40051
UniProt:
A0A1S6HX29
LinkDB
All DBs
Position
complement(5615230..5617572)
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AA seq
780 aa
AA seq
DB search
MTKKVVSKQGAKKAPSKAKSGKKSSAKKTSSGWGRKVWSIGWKLGVIVIAAVSIYSIYLD
QIIARKFEGQKWHLPAQVFSRSMALYPGAAVSHGQLISELKLLGYRKVANPRQVGEFSAS
RTRVDLWRRPFLHPQGDQAEQRVMITFDSQGVSSVSRSQDHRQLAVFHLEPVLLDRIITG
DGEDRVFVKSAKMPSSIIEALILVEDRSFYEHHGVNLFAIARALMVNISAGRTVQGGSTL
TQQLAKNFFLSSERSLIRKAREALMALIIDFRYGKDEILEAYLNEVYMGQDKARGVHGMG
LASQFYFGRPIAELTLSQQAFLVAVIKGPSYYNPWRYPERAQERRDLVLRLLMEGEKISV
AQYKAAAESPLGLRKSDKPVHQKLPAFFAVVKHELARRFGDTLLKQSGIKVYTTLDPMAQ
EAAEKSVKKVMARLGKNDKQLQVGMVLTDKATAGIAAMVGDKSPGYKGYNRAVEIRRPIG
SLIKPFVYATALNQADKYNLATPLKDQPITLKNGQGKTWSPQNVTRKFSGEVPLLTGFKK
SMNVPTVNLGMAIGVSSVATTLDKAGWREKISEYPSMLLGAVNGSPLMVAQVYQTIADNG
RYRRLSSITAVLDKDNKPLPVSRIPQNQALDPATDFLVQYAMTQVVQSGTATRLGKAFPR
VTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGRDDNGKTGLYGSSGAMAVYQDFLEHRPP
ISLRRTPVNGVVNAHFDRTTGKAMEADCNNTIALPALSGSYHPAKNCGEPLSWWQKFTGG
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaagttgtatctaaacaaggtgctaagaaagcaccatctaaagctaagtca
ggtaaaaagtcttcagctaaaaaaacatcctctggctggggccgcaaagtctggtcaatt
ggctggaagcttggcgttattgtcatcgctgcagtgtctatttacagtatctatctggat
caaatcatagcgcgaaaatttgaagggcagaaatggcatcttcccgctcaggtattcagc
cgttccatggccctttaccctggtgccgcagtcagtcatggtcaattgatctctgagcta
aaattacttggttatcgtaaggtcgccaatcccagacaggttggtgaattttccgcttcc
agaaccagagtcgatctttggcgtaggccttttttgcatccccaaggcgatcaggcggag
cagagagtgatgatcaccttcgactcgcaaggtgtgagctcagtgtctcgctctcaagat
catcgtcaactggctgtattccatctcgagccggtattattggatcgaattatcacagga
gatggcgaagacagggtgtttgttaaatccgctaagatgccctcatcgattatcgaagcc
ctcattctggttgaagacagaagcttctatgaacaccacggtgtaaacctttttgctatc
gccagggccttgatggtcaacatcagcgcgggaaggactgtgcagggggggtcgacactg
acccagcagctggctaaaaacttcttcctgtcgagtgagcgctcattgatccgtaaggcc
cgtgaagccctgatggccttgatcattgatttccgttacggcaaagatgagatcttagag
gcgtatcttaatgaagtgtacatgggtcaagataaagcccgcggcgtacacggcatgggc
ttggcatctcagttctattttggtcgtcctatagccgaattaactctatctcaacaagct
ttcttagtcgccgtgattaagggaccttcttactataatccttggcgttatccagagcgt
gctcaggagcgacgagatttggtgctgaggctcttgatggagggggaaaagatctcggtt
gctcaatacaaggccgccgccgaatctccactgggcttgagaaagtcagataaacctgtg
caccaaaagttacccgccttctttgccgtggtgaaacacgaactagcgagacgtttcgga
gataccttactcaagcaatcgggcattaaggtttacaccacactggatccaatggcccag
gaagcggcggaaaaatcggtcaagaaagtgatggctcgactgggtaagaatgataagcag
ctccaagtaggcatggtgctgacagataaggccactgcaggtattgctgccatggtgggg
gataaatctcctggctacaagggatataaccgcgcggttgaaatacgtcgccctataggt
tctctgataaagccttttgtctatgccacggcgctcaatcaagccgataaatataaccta
gcgacgccactcaaggatcagcccattaccttaaaaaatggtcagggtaagacctggtct
ccacagaacgtaaccaggaagtttagcggtgaagtgcccttgcttacaggcttcaagaaa
tcgatgaatgtgcctacggtgaacttgggcatggctattggagtcagcagtgtggcgacg
accttagataaggcgggctggcgagagaagatctctgagtatccatctatgcttctgggg
gcggttaatggctcccccttgatggtggctcaggtctatcaaaccattgctgataacggt
cgataccgtcgcctgtcgtcgatcactgcggttctggataaggacaacaagccactgcca
gtctcacgtatccctcagaatcaggcattggaccctgcgacagacttcctggtgcaatat
gccatgactcaagtggttcaatcgggtactgccactcgcttgggtaaagccttcccaaga
gtgacccttgcgggtaagacgggtaccagtaatgattcccgtgactcctggtttgccgga
ttcgatgaacgtaacgtcgccgcagtctgggttggccgtgatgataacggcaagaccggg
ctctacggcagtagtggggccatggctgtctaccaagacttcctagaacatcgtcctcct
attagcctgagacgtacacctgtcaatggcgtggtgaatgcccactttgatagaaccaca
ggtaaggccatggaggctgattgcaataacaccatcgcattgccagccttgagtggcagt
tatcacccggcgaaaaactgcggtgagccattatcctggtggcagaaattcacaggtggt
tag
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