Shewanella psychrophila: Sps_04977
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Entry
Sps_04977 CDS
T05063
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spsw03016
]
Sps_04977
Enzymes [BR:
spsw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Sps_04977
Transfer RNA biogenesis [BR:
spsw03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Sps_04977
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AQS40055
UniProt:
A0A1S6HWW8
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All DBs
Position
5622896..5623504
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AA seq
202 aa
AA seq
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MQRLFLGVSPTEQQVNQLSDIQSLLTTVGHKGYGRPVNRNNFHMTIAFLGQTDNASLALL
IKAIDAIACTSGWKKFSITLDKLTLWRKPQVLCLSAPSLTQVSLNPELYYTVEHCQKIIH
SIQSKSVPSRSTYNGAEQPTKPHLHFTPHITLLRKAKLLPEKNLIQMGLAAITLNPSQMH
LYRSVSGERGVEYHILHSWPLV
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgactatttttaggtgtctcgccaacagagcagcaagttaatcaactcagcgat
attcagtctctactgactaccgtaggccacaaaggttatggtcgcccagtcaatcgcaac
aatttccatatgacgatcgcctttctcggccaaactgataacgcttctctggccctgcta
attaaggctatcgatgcaattgcttgcaccagtggctggaaaaaatttagtatcacctta
gacaaattaaccctgtggcgtaaacctcaggttttatgtttatccgccccttcactgact
caggtatcgctcaaccctgagttgtattacacagtggagcattgtcagaagattattcat
tcgatacagtcaaagtcggtaccttctaggtcgacttacaacggggccgaacagccaact
aaaccccatctacacttcactccccatataaccttacttagaaaggctaagttattgccg
gagaaaaacctgatacagatgggtttagcagcaattacactcaatccaagtcagatgcac
ttatatcgttctgtcagtggtgaacgcggcgtcgaataccatattttacattcctggcca
ttagtctga
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