Shewanella psychrophila: Sps_05030
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Entry
Sps_05030 CDS
T05063
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spsw
Shewanella psychrophila
Pathway
spsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sps_05030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsw03019
]
Sps_05030
Enzymes [BR:
spsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sps_05030
Messenger RNA biogenesis [BR:
spsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sps_05030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
HI1480
Flavi_DEAD
DUF3110
Rubella_Capsid
Motif
Other DBs
NCBI-ProteinID:
AQS40108
UniProt:
A0A1S6HXG0
LinkDB
All DBs
Position
5685536..5686999
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AA seq
487 aa
AA seq
DB search
MSFTSLGLSAPILKAVANKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKHLPLKSAVVFGGVGIGPQISKL
GKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQ
NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYQVDQKQKTAALIHLIKQ
NDWKQVLVFSRTKHGANRIAKNLEAKELTAAAIHGNKSQGARTKALANFKSGAVRVLVAT
DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDIER
LIKQTIPRKEVEGFVPTQVVAETDLNDRKHGQNRGPRNANGRGNGRNGNSNSRSNDARSS
SGSRQSRNSEGKVEHKDGQRSGEAARGHKPNDNNSGHSRRRSGSQSQNSASAGASKPSSN
GNIWGNK
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggtttatccgctccgattttaaaagccgtagccaataaaggc
tatgagacaccttcgcccattcaagctcaagcgatccccgcagtgctcgaaggcaaagat
gtaatggcagcagcccagactggtacaggtaaaaccgcaggcttcacactacctctatta
gagctgttaagcagaggaaatcgtgctcaagctaagaaggtacgcgctctggtattaaca
ccaactcgagagcttgcagctcaagtagccgagagtgtcgatacctatggtaagcatcta
ccacttaaatccgcagtagtcttcggtggtgtaggcataggcccgcaaatatctaagcta
ggtaaaggcgtcgacatcttagtcgccacgcctggtcgtttacttgacctatacaaccaa
ggtgcagtgaacttcaatcaacttgaagttctcattctcgatgaagccgatcgaatgtta
gatatgggcttcattcatgacatcaaaaaaatccttagagtattgccggctaaacgccag
aacctaatgttctcggcgaccttctccgacgatattcgtaaactggctaaaggcttagtg
aacaatcctgtcgagatatctgttacgccacgtaacgccacggcaaaaagcgttgagcaa
tatatctatcaggtcgatcagaagcagaaaaccgctgcgctaatccacttgatcaagcaa
aatgactggaaacaggtcttagtctttagccgcactaagcatggcgcaaaccgcatagcc
aagaacctcgaagctaaagaacttaccgcagccgcaatccatggcaacaagagccaaggc
gcacgaacaaaagcccttgctaacttcaagagtggtgctgttcgtgtattagtcgcaacc
gatattgcagctcgtggtatcgatatcgaccaactgcctaatgtagttaacttcgacttg
ccgaatgtaccagaggattatgtccatcgtatcggccgtactggtcgcgctggcgccagt
ggtcaagcagtctccctagtgagtggtgatgaaagcaagcttctcagggatatagaacgc
ttaataaagcaaactattccccgtaaggaagtggaaggctttgtgccaactcaagttgta
gccgaaaccgatctcaatgacagaaagcatggtcaaaaccgtggcccgcgtaatgctaat
ggccgtggtaatggtcgtaacggcaactcgaattcacgtagtaatgatgctcgttcaagc
tcaggttctcgtcaatcccgcaacagcgaaggcaaggtcgagcataaagatggtcaacgc
agtggcgaagccgctcgcggtcataaaccaaatgacaataactcgggtcatagccgtcgt
agatcagggtctcagtcacaaaacagtgcaagtgctggcgcctcaaagccttcaagtaat
ggcaatatttggggcaacaagtaa
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