Shewanella psychrophila: Sps_05282
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Entry
Sps_05282 CDS
T05063
Name
(GenBank) DNA/RNA helicase, superfamily II, SNF2 family
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsw03021
]
Sps_05282
Transcription machinery [BR:
spsw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Sps_05282
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Flavi_DEAD
PrkA
Motif
Other DBs
NCBI-ProteinID:
AQS40351
UniProt:
A0A1S6HXW4
LinkDB
All DBs
Position
5935761..5938667
Genome browser
AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVVGLEGRMVTLMFPATDENRLFSRTEAPLTRVIYNPGDK
VESHEGWSLTVSELEEKNELIIYHGIHTETGEQVSLRETLLNHNVRFNKPQDRLFAGQID
RLDRFGVRYQSQLLRNKLATSDLLGLQGPRVGLIPHQQWIAHEVGRRFAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILVIVPDTLRHQWLVEMLRRFNLKFSVFDEDRCIEAYAD
NDNPFYTEQLVICSLELLRKKKRLEQAIDADWDLMIVDEAHHLEWTEEAPSRAYRIVEAL
SEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYEAFLEEENSYKDVASAAEALASG
DTLSSEAVSQLTTLLSEKDIDETLELIQASDADVDKQQAARDELLQDLLDRHGTGRVLYR
NSRASVKGFPTRIFHAHPQAMPSQYVTAARVGAMMNGHLDTPAKVKQALSPEKIYQDFES
SSASWWKFDPRVDWLIEFLKTNRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQETGGAQALICSEIGSEGRNFQFASQLILFDLPLNPDLLEQRIGRLDR
IGQNNDVEIHLPYLAGTAQECLMQWYHTGLNAFEQTCPSGHILFNEFSESLLSQLITQDE
SALQELLSNTQTRYQELKTAMEQGRDKLLEINSHGGDRATKLVQRLAERDEDTQLIGSVI
RLWDIIGVEQEDCGENTIVLKTSEHMMFPTYPGLSEDGMTITFDREMALSRDDIALITQE
HPLVQTGLDLITSSETGSTSVAVLKNKALPAGTIFLELIYMADASAPKSSQLYRYLPPTP
VRILLDKNGNNLSDNVTYESFNKQLSAVNRHIASKLVNASQSVLHPLFAKGEEFAQTELK
LLAESARAKMTSQLTVELERLESLKAVNPNIRDEEITHLKDQMTELNGYLDDSLLQLDAV
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgctggataagtgataccgaatcagaacttggtttaggt
acagtcgtaggattagaaggccgtatggtcacgctgatgtttccagcaaccgatgagaac
aggctgttctcacgcaccgaggctcccctgactcgagttatttataatcctggcgataaa
gttgaaagccatgaaggatggagcctgaccgtcagtgagcttgaagagaagaatgagctc
attatctaccacggaattcacaccgaaactggtgagcaagtctcgctcagagagacccta
ctcaaccacaatgttagattcaataagcctcaagacagactattcgccggtcagatcgat
cgcttagacagattcggcgtccgctaccagagccaattattgagaaataaactggccaca
tcggatcttctgggattacagggaccgagagtcggcctgatcccacatcagcagtggatc
gcccatgaagtgggtcgccgttttgctcctagagtattactcgccgatgaagtaggccta
ggtaagacaatcgaggcgggattgatcattcatcagcagctgcttaccggccgcgccgag
cgaattctggttatcgttcccgataccctacgtcatcagtggcttgtcgagatgctgcgc
cgcttcaacctgaaattctctgtattcgatgaagacagatgtatcgaagcttacgccgat
aacgacaatccattttataccgaacaactggtgatctgctcactggagctattacgcaag
aagaaacgcctagaacaagccatagatgccgattgggatcttatgattgtcgatgaagca
catcatctggagtggaccgaagaagcacctagccgcgcctaccgtatcgttgaagccctg
agtgaagtcgtacctggcgtattgctacttacagcgacgccggatcaactgggtcatcag
agtcactttgccagattacgcttgctggatcccgatcgtttctacgattatgaggccttc
ctcgaagaggaaaacagctacaaagatgttgccagtgctgccgaagcgcttgctagtggc
gacacactgagcagcgaagctgtatctcagttgacgactctgctcagtgagaaagatatc
gacgagactctggagttaattcaggcaagcgatgccgatgtggacaagcaacaagccgcc
cgtgatgagctgttgcaagatctactggacagacatggcacaggccgagtcctgtaccgt
aacagccgcgcatcggttaaaggcttccctacgcgtatcttccatgcacatccgcaagct
atgccaagtcaatatgtgacggctgcgcgagttggcgccatgatgaatggccacttagat
accccggctaaggtcaaacaggcccttagccctgaaaaaatctatcaagattttgagagc
agcagtgccagttggtggaaatttgatcccagagtcgattggctcatcgagtttttgaag
accaaccgtagcaagaaggtgctgattattgccagccaagcggaaaccgcactgagcctt
gaagaagctctgcgtacccgtgaaggtattcaagcgaccgtgttccatgagggcatgtcg
attatcgaacgagataaggctggcgcctactttgctcaggaaactggtggtgctcaggcg
ctcatctgtagcgaaattggctcagagggacgaaacttccagtttgccagtcagttaatc
ctgtttgatctgcccctgaatccggatctgctggagcaacgcatcggccgtttagatcgt
atcggtcaaaacaacgatgtcgagatccacttgccttatctagcaggaacggcccaagag
tgtctgatgcagtggtatcacactggactcaatgcgttcgagcagacctgtccaagtggg
cacatactcttcaacgagttctctgagtctctgctttctcagttgatcacccaagacgaa
tctgcgctccaagaattgctaagcaatactcagactcgttatcaagagctaaagacggca
atggaacaaggccgagataagctgcttgaaatcaactcccatggtggcgatcgcgcaact
aagttggtgcagcgtctggctgaacgcgatgaagacactcaacttatcggctcagttatc
cgtttatgggacatcataggtgtcgagcaggaagactgcggtgaaaacaccatagtgctc
aagaccagtgaacatatgatgttcccgacttacccgggattatccgaagatggcatgact
atcaccttcgacagagaaatggccctgtcccgtgatgatattgcccttatcactcaggag
catcctctggttcagacaggtttagacttgatcacctcgtccgaaacgggtagcaccagc
gtagcggtattgaagaataaggcactccctgcaggaaccatcttcctcgagctgatctat
atggccgatgcttcggcacctaaatcgagccaactatatcgatacctaccgccaacacct
gtacgtatcttactggacaagaacggcaacaacttgtctgacaatgttacttacgagagt
ttcaataagcagcttagcgcggtcaatcgacatattgccagtaagctggtcaacgcctct
cagtccgttttacaccccttatttgctaagggagaagagtttgcacagaccgagcttaaa
ctgcttgcagagagtgccagagcaaaaatgacctctcagctcacggtggagctagaacgt
ctcgaatcactcaaggctgtcaatcctaacattcgtgacgaagagatcactcacctgaag
gatcagatgaccgaactcaatggatacttagacgatagcctactgcaactcgatgcagtg
cgcttggtgctagtgagccacgcttaa
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