Shewanella psychrophila: Sps_05360
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Entry
Sps_05360 CDS
T05063
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
spsw
Shewanella psychrophila
Brite
KEGG Orthology (KO) [BR:
spsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsw03019
]
Sps_05360
Messenger RNA biogenesis [BR:
spsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sps_05360
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
AQS40429
UniProt:
A0A1S6HY53
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All DBs
Position
complement(6019612..6021522)
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AA seq
636 aa
AA seq
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MKLTRLLTNKLTSFWLLSLAAVAFIFLLVALVSFTQLTYKFQQQKVTELESMLIHHYEHE
SNKSLSTWLPSILTAYNTVSLTLSAEGKTLYQYGAGKSGAGMITYERLLIKPDKLTFVIT
LPQPFKMYSLSWYEFSILVIGLLSISVFVFLGHRWLSMQLQGIEDLAVRSKLILENEYDK
ALAERGDGRPRMINRALTHLLLELDDAEKQRARFDQFIRSNTFLDPETGIGNRLFLKNRL
DALSNDKGMMAPGVLFLLEMEDMDLLQQEFGDDSIDEMLHQTISDINQILDSQANSIFSR
RSFNQFAIVVPQISLKDVEKLAAKLLKVCLSQNVPETENSEDFFHIGAAYFKVGDSKEQL
LDESERALRAAQFQGTSGWFMYDKGAVDEELAKGSVRWRSFLEYALVNRRLVVFSQPVVD
SDMETHHLEISSRIRDNKNNLIRATLYIPMAIKCGLTPQFERQVIETVLFDLLSDPKDKT
TKFSINLSLDTLMSRAFIRWLKTTLLEYRHLTPRLIFEINEDIVVHHKEQLKPRLDMIKK
MGASLCVDRVGQQVVSTEYIKECHFDLIKLHRSIVTQIHLRQENQLFVRSLIGVLYRTDV
QVFAEGIESFEEWQTLKILGVSAGQGNLFSEPVEEI
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgacacgacttctcactaataaattgaccagcttttggctactttctctggcg
gccgttgcatttatatttttgcttgttgccctagttagcttcacgcaattgacctataaa
tttcaacagcagaaggtgactgagctcgagtccatgcttattcatcattatgagcatgag
agcaacaaatcactgtctacttggcttccctccatcttaactgcatataacacggtaagt
ttgaccttgagcgctgaaggtaaaacactctaccagtacggagctggtaaatccggggct
ggcatgatcacctatgagaggttgctgattaagcctgataaacttacctttgtgatcacc
ttacctcagccatttaagatgtattcactttcttggtatgaattctctatcttagtgatt
ggcttactctctatctctgtgtttgttttcttaggccatagatggttatcgatgcagcta
cagggaatcgaagatctggcggtgcgcagtaaacttattttagagaatgaatatgataaa
gctttagccgagagaggggacggcaggccgagaatgataaatcgtgccctgacacatcta
ctgctagaactcgatgatgcggagaagcagagagccagattcgatcaatttatccgctcc
aatacgtttttggatccagaaactgggatagggaaccgcttatttcttaagaatcgtctc
gacgcattgagtaatgataaaggtatgatggctcctggcgtgctgtttttacttgagatg
gaagatatggatctactgcagcaagagtttggggatgactccatagatgagatgctgcat
cagacgattagcgatattaatcagattttggacagtcaggctaacagtattttttctcgt
cgttctttcaatcagttcgccattgttgttcctcaaatctccttaaaagatgttgaaaag
ctagccgcaaaattgctcaaagtctgcttaagtcaaaacgtcccagagacagaaaatagt
gaagatttttttcatatcggtgcggcttatttcaaagtaggtgacagcaaggagcagttg
ctcgacgagtcagagagagcccttagggcagctcaatttcagggaaccagtggctggttt
atgtatgacaagggtgccgtggacgaagagttggcaaaggggtcggttagatggcgcagt
tttctcgagtatgccctggtcaatcgacgtttagtcgtcttctcccagccagtggtcgac
agtgatatggaaactcatcacttggagatttctagtcgaatacgtgacaacaaaaacaac
ctgattagagctacactctatatccctatggcgataaaatgtggtttgacacctcaattc
gagcgtcaggtcatcgagactgtactgttcgacctcctatcagaccctaaggataaaacc
accaagttcagcatcaacctgagtttagataccttgatgagtcgggcatttatccgttgg
ctgaaaacgaccctgttagagtatcgacacctcactcctagactgatcttcgaaatcaat
gaggacatagttgtgcatcataaagagcagttaaaacccagactggatatgattaagaaa
atgggcgctagtctatgtgttgaccgtgtggggcagcaggtagtcagtactgaatatatc
aaagagtgtcatttcgatctgataaaacttcatcgttcaattgtgactcaaatacacctt
cgtcaagaaaatcagctgtttgtacgtagtcttatcggtgttctatatagaacggatgtt
caggtttttgccgaggggatagaatctttcgaggagtggcagaccctgaagattttaggt
gtcagtgcgggtcagggaaacttgtttagcgagccggttgaggaaatatag
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