Sporosarcina psychrophila: AZE41_01400
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Entry
AZE41_01400 CDS
T04327
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spsy
Sporosarcina psychrophila
Pathway
spsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AZE41_01400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spsy03021
]
AZE41_01400
03400 DNA repair and recombination proteins [BR:
spsy03400
]
AZE41_01400
Enzymes [BR:
spsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AZE41_01400
Transcription machinery [BR:
spsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AZE41_01400
DNA repair and recombination proteins [BR:
spsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AZE41_01400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AMQ04728
LinkDB
All DBs
Position
320117..323704
Genome browser
AA seq
1195 aa
AA seq
DB search
MIDVNNFEYMKIGLASSDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
TPRALEEIIYFASYVVVDPADTPLERKQLLSEREYRIYREKYGSKFQALMGAEAIERLLA
AIDLEKEMEFLKEELKTVQGQRRTRAIRRLEVVEAFRNSGNKPEWMVLEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAITLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGASGEGTSFRDADEALIAYHNGFVHLHSRIAIQ
ARSLNNPTFTEEQNAKLLITTVGKVIFNEILPKSFPYINEPSDFNLQIETPDKYFVSGTV
NIKEHVAEQELIEPFKKKILGNIIAEIFKRFHITETSRMLDRMKNLGFKYSTRAGITIGI
SDIVVLPNKDDILHEAQAKVDKVLQQFRRGLITEEERYDRVISYWSHAKDVIQDKLMDSL
DHSNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLDIGALMDGTEVIEGLD
ERIEGRHTKKSIYHPETGALILKRDGLITADAARAILDAGLEQITIRSAFTCNTKHGVCK
LCYGINLATGETVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIF
ESRNPKGVAVISEIKGQIIEIDEIREGQKEITIEGEVETRKYLTPYNARLKVDVGDMIDR
GEVITEGSIDPKELIVVKDVVTVQVYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRI
IEAGDTDLLPGSLLDIHQFSDANAEVLKVNKIPATCRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKTDELLGLKENVIIGKLVPAGTGMQRYRHIVMEQEKEKATTK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaacaattttgagtatatgaagatagggcttgcttcatctgataagatc
cgttcatggtcatatggtgaagtgaaaaagccggaaacaattaactaccgaacattgaaa
cccgaaaaagatggtctgttctgtgaacgtatttttggacctacaaaagattgggaatgt
cattgcggaaagtataaacgcgttcgttataaaggcgtcgtttgtgaccgttgtggagta
gaggtgacgcgtcaaaaagtccgccgtgaacgtatgggacatattgaactagcagctcca
gttacacatatttggtacttcaaaggaattccaagccgaatgggtcttatccttgatatg
acaccacgtgctctggaggaaattatctatttcgcgtcttatgtagtcgttgaccctgcg
gatactccgcttgaaagaaagcaactgctttctgaacgggaataccgtatctaccgcgaa
aagtatggttctaaattccaagcgctcatgggcgctgaagcaattgaacgtcttcttgca
gctatcgatcttgaaaaagagatggagttcttgaaagaagaattgaaaacagttcaaggg
caacgtcgtacgcgtgcaatcaggcgcctagaggttgttgaagctttccgtaactcgggc
aataagcctgaatggatggttcttgaagtgttaccagtcatcccgccggagcttcgcccg
atggtccaacttgatggtggacgatttgcaacatccgacttgaacgacctgtaccgaagg
gtcatcaaccggaacaacagattgaaacgcctattagatttaggagcaccaggaatcatt
gttcagaatgagaagcggatgctgcaagaagcagtcgatgcgctcatcgataatggtcgt
cgtggccgtccggttacaggacctggtaaccgtccattgaaatccctttctcatatgttg
aaaggtaagcaaggacgtttccgtcaaaacttactaggaaaacgtgttgactattctggt
cgttccgttatcgtcgtaggacctaacctgaaaatgtatcagtgtggtctgccgaaagag
atggcgattgaactgtttaaaccgtttgttatgaaagaactcgttgaacgaggtcttgcg
cacaacattaagagtgccaaacgtaaaattgaacgcctccattcagaagtttgggacgtt
cttgaagaagtcatcaaggagcatccggtcttattgaaccgtgccccgactcttcaccga
cttggtattcaagcattcgaaccaatccttgtagaaggacgtgcgattacgcttcaccca
ctggtttgtacagcttataacgctgactttgatggtgaccaaatggcagtccacgttccg
ttatccgcagaagcacaagcggaagcgcgtctacttatgctagcagcacaaaacattttg
aacccgaaagacggaaaaccagtcgttacgccttctcaggatatggttttaggaaactat
taccttacactggaacgtaaaggcgcgtcaggagaaggtacttcattccgtgatgcggat
gaagcactaattgcttatcataacggtttcgtgcatcttcattcacgtatcgctattcag
gcaagatctttgaataatcctactttcactgaggaacagaatgcaaaacttcttataacg
acagtcggaaaagtgattttcaacgagattctgccgaaatcgttcccgtatattaacgaa
ccgtcagacttcaacttgcaaattgaaacaccagacaagtattttgtatctggaactgtc
aatataaaagagcatgttgctgaacaggaactaattgaaccgtttaagaaaaaaatcctt
ggaaatatcattgcggagatcttcaaacgtttccatattacagaaacgtcaagaatgctt
gaccgcatgaaaaatcttggattcaaatattctactcgtgcaggaattacaattggtata
tccgacattgtcgttctacctaataaagatgatatcttgcatgaagcacaagcaaaagtg
gataaagtgttacaacagttccgtcgtggtctcattacagaggaagagcgatatgatcgc
gttatctcttactggagccatgctaaggatgtaatccaagacaaactaatggactcactt
gaccactcaaacccgatttatatgatgagtgactcgggtgcccggggtaacgcgtcaaac
tttacgcagcttgctggtatgcgtggtctgatggccaatccggccggtcgaatcattgaa
ctaccaatcaaatcgtcattccgtgaaggtctgacagtgcttgagtacttcatctcaaca
cacggtgctcgtaaaggacttgcggatactgctcttaagacagccgactcaggttacttg
acacgtcgacttgtcgatgttgcacaagacgtaattgtccgtgaagatgattgtggtaca
gatcgcggattggatatcggagcacttatggatggaacggaagtaatcgaaggtctagat
gaacgtatcgaaggccgtcacacgaagaaatcgatttatcatcctgaaacaggcgctttg
attcttaaacgagatggcttgattactgctgatgcagctcgtgccattttggatgcggga
cttgaacaaataacaattcgttctgcgttcacatgtaatacgaaacacggcgtttgtaaa
ttatgttacggcattaacttggcaacaggtgaaacagtcgaggttggtgaagcggttggt
attatcgctgcacaatctatcggtgagccgggtacacagcttacaatgcgtacgttccat
acaggtggagttgcagggtccgacataacacaaggtcttccacgtatccaggaaattttc
gaatcgcgtaatcctaaaggggttgcagttatttcggaaatcaaaggtcaaatcattgaa
attgatgaaatacgtgaaggtcagaaagaaattacgattgaaggcgaagtagaaacgcgg
aaatatctgacgccatacaacgcccgtcttaaagttgatgtcggtgatatgattgaccga
ggtgaagtcataacagaaggttctatcgatccgaaagaactgattgttgttaaagacgtc
gttaccgttcaagtctatctcttgaaagaagttcaaaaagtttaccgtatgcagggtgtt
gaaatcggtgataagcacattgaagtaatggttcgccaaatgcttcgtaaagtgcgcatc
atcgaagcaggggacacggatctattgccaggttcactactcgacattcaccaattctca
gatgcgaatgcggaagtacttaaagtcaataaaattccagcgacttgtcgtcctgttatt
ctcggtattacgaaagcttcacttgaaacggaatccttcttatcagcagcatcattccaa
gagacaactcgtgtcttgacagatgcagctattaaagggaaaacggacgagttactaggc
ttgaaagaaaacgttattatcgggaaacttgttccagctggaacaggaatgcagcgttac
cgtcatattgtaatggaacaagaaaaagaaaaagctacaactaagtaa
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