Sporosarcina psychrophila: AZE41_06120
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Entry
AZE41_06120 CDS
T04327
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spsy
Sporosarcina psychrophila
Pathway
spsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZE41_06120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spsy03019
]
AZE41_06120
03009 Ribosome biogenesis [BR:
spsy03009
]
AZE41_06120
Enzymes [BR:
spsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZE41_06120
Messenger RNA biogenesis [BR:
spsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZE41_06120
Ribosome biogenesis [BR:
spsy03009
]
Prokaryotic type
rRNA helicases
AZE41_06120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AMQ05525
LinkDB
All DBs
Position
1268264..1269700
Genome browser
AA seq
478 aa
AA seq
DB search
MTFQDYNLSKEITRALDGLGYSSPTEVQEKVIPAALTKNDLVVKSQTGSGKTAAFGIPIC
EMVDWDENKPQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKSPYAYQKEELKQKC
HVVVGTPGRVFDHIERGSLVLDRIEYLVLDEADEMLNMGFIDQVESIINKLPKNRTTMLF
SATLPEKIGKLSSKYMKNPKNIEIASTVTLTDQIDHSLIIVRDPQKFDLLRDVTVVENPD
SCIIFCRTKDQVDSVTEQLEKLHYTCDKLHGGMMQEDRFSVMDEFKRGEFRYLVATDVAA
RGIDIDSITHVINYDLPVETESYVHRVGRTGRAGKRGKAISFVTPNENHFLDEIEAYIGF
EIQQRNAPSKQAVVVAMGAFTEKIESLPELKKNKNELVNKDIMKLYFNGGKKKKLRAVDF
VGTITNIPGVSAEDIGIIKIQDTVTYIDILNGKGKLVLNEMKTTTVKGKLLKVHKANK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaggattacaacttaagcaaggagattacacgggcgctagacgggcttggg
tattcttcaccaacagaagtgcaggagaaagtaattcctgcggcacttactaaaaacgat
ttagttgtcaaatcacagacgggtagcgggaagactgcggcttttggaattcccatctgt
gaaatggttgactgggacgagaacaaaccacaggcgctaattttaacaccgacgcgtgaa
ctcgcagatcaggtcaaagaagacattacaaacattggccgttttaagcgtattaaagct
gccgctgtttacgggaaatcaccatatgcctatcaaaaagaagaactaaagcaaaaatgc
cacgtagttgtcgggacaccagggcgtgtattcgatcatattgagcgaggttcacttgtg
cttgatcgaattgaatatctggtgctagatgaagctgatgaaatgctaaatatgggcttt
attgaccaagtcgaatcgattattaataaattaccgaaaaatagaacgactatgcttttc
tcagcaacacttccagaaaagataggcaaactaagcagtaaatatatgaagaacccgaaa
aatattgagatagcttctactgttacattgacggatcaaattgaccactcactcattatc
gtaagggacccacagaaatttgacctgctgcgtgatgtgaccgttgttgaaaatccagat
agctgcatcattttttgccggacaaaagatcaagtggatagtgttactgaacagcttgaa
aaactccactatacttgcgacaaactccatggcggcatgatgcaggaagaccgtttctct
gtcatggatgaattcaagcgcggcgaattccgttacctagttgccacagatgttgctgca
cgtggtattgatatcgacagcattacgcatgtaattaactatgatctccctgtggaaact
gaaagctatgtgcatagagtagggagaactggacgggctggtaagagagggaaagcgatt
tctttcgttacgcctaatgaaaatcacttccttgatgagattgaagcgtacattggattt
gaaattcaacaacgcaatgctccatccaaacaggcagttgtagtagcaatgggcgcattt
acagagaaaatagaaagccttcctgaattgaaaaagaacaaaaatgaactagtaaataaa
gatattatgaagctctattttaacggtggtaaaaagaaaaagcttcgcgcggttgacttt
gtcggtacaattacaaatattcctggcgtatctgcagaagacatcggaatcattaaaatc
caggacactgtgacctatattgatatactgaatggcaaaggtaagttggtgttgaatgaa
atgaaaacgacaacagttaaagggaagttattgaaagtgcataaagcgaataaataa
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