Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150: SPA1666
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Entry
SPA1666 CDS
T00219
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spt
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Pathway
spt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPA1666 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spt03019
]
SPA1666 (rne)
03009 Ribosome biogenesis [BR:
spt03009
]
SPA1666 (rne)
Enzymes [BR:
spt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SPA1666 (rne)
Messenger RNA biogenesis [BR:
spt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPA1666 (rne)
Ribosome biogenesis [BR:
spt03009
]
Prokaryotic type
rRNA processing factors
SPA1666 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AAV77591
UniProt:
A0A0H2WQC2
LinkDB
All DBs
Position
1727316..1730519
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AA seq
1067 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PTPVEPAVSVATAKKDNVAAEQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAE
RQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQAQQQNAEARDTRQQET
AEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRK
QRQLNQKVRFTNSTVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQ
DDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKV
WIRYPIVRPQETQVVEEQREADLALPQPVVAEPQVIAATVALEPQASVQAVENVAVEPQT
VAEPQAPEVVKVETTHPEVIAAPVDEQPQLIAESDTPEAQEVIADAEPVAETADASITVA
ENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQVVEKPQDVVCVDDHNHASAPMTRAP
APEYVPETPHHSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgcgtcgcccttgtagat
gggcagcgtctgtacgatctggatatagaaagccccggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagcctggaagcggcttttgttgattac
ggcgcagaacgccacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aactacagcgctcatggtcgcccgaacatcaaagacgtgttacgcgaaggccaggaagtc
attgttcaaatcgataaagaagagcgcggcaacaaaggcgcggcgttaaccacctttatc
agtctggcgggcagctacctggtactgatgccgaataacccgcgcgcgggtggtatctcc
cgtcgcattgaaggcgacgatcgtaccgagttaaaagaagcgttggccagcctggaactt
cctgaagggatggggcttatcgtacgtaccgcgggcgtgggtaaatccgccgaagcgttg
cagtgggatttaagcttccgcctgaaacactgggaagccattcagaaagccgctgaaagc
cgtcccgcgccgttcctgatccatcaggaaagcaacgtcatcgtacgcgcgtttcgcgac
tatctgcgtcaggatatcggtgaaatcctaatcgacaatccaaaagtgatggaaatggcg
cgtcagcatatcgccgcgttgggccgcccggattttagcagcaaaattaagctatacacc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcagatcgagtctgcgttccag
cgtgaagtgcgcctgccctccggcggctccatcgtcattgacagcaccgaagcgttaacc
gctatcgatatcaactccgcccgcgcaactcgcggcggcgatatcgaagaaaccgcgttc
aacaccaatctcgaagcggccgatgagattgcccgccagttgcgtctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgtcaccagcgcgcggtagaa
aaccgcctgcgtgaagcggtgcgtcaggaccgggcgcgtattcagattagccatatttcc
cgcttcggcctgctcgaaatgtcgcgtcagcgcctgagcccgtcgctgggcgaatccagc
catcacgtgtgtccgcgctgtagcggtaccggcaccgtgcgcgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagagaatacgcaggaagtccat
gccattgttccggtgccgatcgcctcttatctgcttaacgaaaaacggacggcagttaac
gctattgagacgcgtcaggatggcgtccgctgtgtcatcgtcccgaacgatcagatggaa
acgccgcactattccgtgctacgcgtacgcaaaggggaagaaacgccgaccctgagctac
atgctgccgaagctgcacgaagaagcgatggcgctgccttctgaagaagagtacgccgag
cgtaaacgcccggaacagcctgcgctggcgacattcgctatgccagatgtgcctccggcg
ccgacgcctgtcgaaccggcggttagcgttgctacggcgaaaaaggataatgttgccgcc
gagcagcctgcccagccgggtctgtttagccgcttccttaacgcgctgaaacaactgttc
agcggtgaagaaacgaaaaccgtcgaaacagccgcgccgaaagcggaagaaaaagcggag
cgtcagcaggatcgtcgcaagccacgacagaacaaccgtcgcgatcgtaacgaacgccgc
gacacccgtgataaccgtgccggacgtgacggcggcgagagccgcgacgataatcgtcgt
aaccgtcgccaggcgcagcagcaaaatgcggaagcgcgcgatacccgccagcaggaaacg
gcggaaaaagtgaaaaccggcgatgagcagcaacagacgccgcgtcgcgaacgcagccgc
cgccgcaatgatgacaaacgccaggcgcagcaggaagtaaaagcgcttaaccgcgaagaa
cagcctgtccaggagaccgagcaggaagaacgcgttcagcaggttcagccgcgccgtaag
caacgtcagcttaatcagaaagtccgctttaccaacagcacagtggttgaaacggttgac
acgccggtcgtcgtcgacgaaccacgcccggttgaaaacgttgaacagcccgttccagcg
ccgcgtaccgagctggcgaaagttgatttacctgtcgttgccgatatcgcgccggagcag
gatgatagcgtagaacctcgcgataataccggtatgccgcgtcgctcccgccgttctccg
cgccacctgcgcgtaagcggtcagcgtcgccgtcgctatcgtgacgagcgctacccgaca
caatcgccgatgccgttaaccgtcgcctgcgcgtcgccagaaatggcgtccggtaaagtc
tggatccgctacccgattgtccgtcctcaggaaacgcaggttgttgaagagcagcgtgaa
gcagatctggcgctgccacaaccggttgtcgctgaaccgcaggttatcgctgcgaccgta
gcgctcgaaccacaagcgtcggtacaggcggtagaaaacgttgccgttgaaccgcagacc
gtcgccgaaccacaggcgccggaagtcgtcaaggtcgagacaacgcatccggaagtgatt
gccgcgccggttgatgaacagccgcaactgattgccgaaagcgatacgccggaagcgcaa
gaggttattgctgacgccgaaccggtagcagaaaccgccgacgcgtccattacggtggct
gaaaacgtagctgatgttgtcgttgtcgagccagaagaagagacaaaagcggaagcggct
gttgtggagcacacggcagaagaaaccgttatcgcaccggcccaggtggtggaaaagccg
caggacgttgtctgcgttgacgatcataaccacgccagcgcgccgatgacgcgtgcgcca
gcgccggaatatgtgccggaaaccccgcaccatagcgactggcagcgcccttccttccac
tttgaaggtaaaggcgcagcaggcggacacagcgccacacgtcacgccagcgccccggcg
acacgcccacagccggtagaatga
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