Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150: SPA3079
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Entry
SPA3079 CDS
T00219
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
spt
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Pathway
spt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SPA3079 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spt03021
]
SPA3079 (rpoD)
Transcription machinery [BR:
spt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPA3079 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMEM120A-B
YicC-like_N
Motif
Other DBs
NCBI-ProteinID:
AAV78914
UniProt:
A0A0H2WSU5
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All DBs
Position
3186724..3188706
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AA seq
660 aa
AA seq
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MPHIDREAPDSRSERQRPKYKYALALNVDSYTVDTNQTNKCGYRLMEQNPQSQLKLLVTR
GKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLAENTTSTD
EDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCS
VAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTATHVGSELSQEDLDDD
EDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLS
EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSE
TWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEAKAR
RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK
IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA
REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatatcgatcgggaagcccccgacagccgcagtgagaggcagcggccaaaatat
aagtatgccctcgctttaaatgtcgacagctataccgtcgacaccaatcaaacgaataag
tgtggataccgtcttatggagcaaaacccgcagtcacagctgaaacttcttgtcacccgt
ggtaaggagcaaggctatctgacctatgctgaggtcaatgaccatctgccggaagatatc
gtcgattcagatcaaattgaagatatcatccaaatgatcaacgacatgggtattcaggta
atggaagaagcgcctgatgccgatgatctgctgctggctgaaaataccaccagcaccgat
gaagatgcggaagaagctgctgcacaagttctgtccagtgttgagtctgaaatcggtcgt
acgactgacccggtacgcatgtatatgcgtgaaatgggcactgttgaactgttgacccgg
gaaggcgaaatcgacatcgctaaacgtatcgaagacgggatcaaccaggttcaatgctcc
gttgccgaatacccggaagccattacctatctgctggaacagtacgatcgcgttgaggct
gaagaggctcgtttgtccgatcttatcaccggctttgtcgatccgaacgcggaagaggag
atggcgccgaccgcaactcacgtcggttctgaactctcccaggaagacctggatgatgac
gaagacgaagatgaagaagacggcgacgatgacgccgccgatgacgacaacagcattgac
cctgaactggcacgcgaaaaattcgctgagctgcgcgcgcaatacgtcgttacgcgcgac
accatcaaagcgaaaggccgcagccatgctgccgcgcaggaagagattctgaagctgtct
gaagtgttcaaacagttccgtctggtaccgaagcaattcgactatctggtcaacagtatg
cgcgtgatgatggatcgcgtgcgtactcaggaacgtctgatcatgaagctctgcgtcgag
cagtgcaaaatgccgaagaagaactttatcacgctgtttaccggtaacgaaaccagcgaa
acctggttcaacgccgctatcgcgatgaacaaaccgtggtcggaaaaactgcacgatgtc
gcggaagaagtgcaacgctgcctgcaaaaactgcggcagattgaagaagagaccggtctg
accatcgaacaggtgaaagacatcaaccgtcgcatgtccattggtgaagcgaaagcccgc
cgtgcgaaaaaagagatggttgaagcgaacttgcgtctggttatttctatcgccaagaaa
tataccaaccgaggtctgcagttcctcgatctgattcaggaaggcaacatcggtctgatg
aaagcggtagataagttcgaataccgtcgtggttacaagttctccacctacgcaacctgg
tggatccgtcaggcgatcacccgctctatcgccgaccaggcgcgcaccatccgtattccg
gtgcatatgattgagaccatcaacaagctcaaccgtatttctcgccagatgctgcaagag
atgggccgcgagccaacgccggaagagctggctgaacggatgctgatgccggaagataaa
attcgtaaggtgctgaaaatcgccaaagagcctatctccatggaaacgccgatcggcgac
gatgaagattcgcatctgggtgatttcatcgaggataccaccctcgagctgccgctggac
tctgccaccaccgagagcctgcgcgccgccactcacgacgttttggctggcctgaccgct
cgtgaagcgaaagtcctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctg
gaagaagtgggtaaacagttcgacgttacccgcgaacgtatccgtcagatcgaagcgaag
gcgctgcgtaaactgcgccacccgagccgttctgaagtgctgcgcagcttcctcgacgat
taa
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