Sphingobium sp. TA15: Sj15T_04500
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Entry
Sj15T_04500 CDS
T11324
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spta Sphingobium sp. TA15
Pathway
spta03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sj15T_04500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spta03400
]
Sj15T_04500
Enzymes [BR:
spta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sj15T_04500
DNA repair and recombination proteins [BR:
spta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sj15T_04500
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-ProteinID:
BDD65429
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Position
1:438737..441226
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AA seq
829 aa
AA seq
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MADADPLSAYNRKRDFSRTREPAGRRGRRQGNGFIVQKHDATRLHYDFRLEMDGVLKSWA
VTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSASD
LEKGHLHFILHGERMRGEWLLIRLKPRGREKRENWLLRKIEDAHAGSADDLIARNLTSIR
SGRTMAEIAAGAPAISLKGKKGKAFDAAMAQADRAVPAKRRARAGSDRPPPFQPPQLATL
VDAVPTGNGWMHEIKYDGYRCLVSASGGKVRIFTRSGLDWTDRFAPLPAEIAAMNLPGAL
IDGEVVALGSDGNPDFSTLQQLLKGEGKAALHLFAFDLLQLDGQDLTAMPNIGRKEKLAA
LLGEGAAHVHVGDHVVGAGERLFQAMCGAGQEGIISKRADAPYRGARTKNWLKVKCTRRQ
EFVIVGWTLSGASGRSIRNLLLGQREGEGLVYAGKVGTGFNAANSAGLVAALGKRGRKTA
ALSVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAAREVRREEAMPTP
EAQSSIQISNPDRLIFPEAKITKGELAEYYARMGAAMLPWIARRPISLVRCPQGRAKKCF
FQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSDGLLACVQMGAIEFHGWGSGVADVER
PDRMIFDLDPDEGLDFEDVKKAARDIRRALEDMGLASFAMLSGGKGIHVVVPLTPQAQWP
EVKDFADRFARALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARELAS
VAAPVTWEELDGIESAAHFTVKDAALLLDRASSRDLRGWGEAHQPLPAH
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgccgatccgctcagcgcctataaccgcaagcgcgatttcagccggactcgc
gaaccggcgggcaggcgcggccgcaggcagggcaatggcttcatcgtgcagaagcatgac
gcgacccgcctgcattacgatttccgcctggaaatggacggcgtgcttaagagctgggcg
gtgacgcgagggcccagcatcgatcccgcggacaagcggctggccgtccgaaccgaggat
cacccgctgtcctatgcgacgttcgaggggacgatccccaagggcgaatatggcggtggc
acggtcatgctctgggacgagggcacctgggagccggtccccggcaagagcgcgagcgac
cttgagaaagggcatctccacttcatcctgcacggcgagcggatgcgcggcgaatggctg
ctgatccggctgaagccgcgaggtcgggaaaagagggaaaactggctgctgcgcaagatc
gaggatgcccatgccggcagcgctgacgatcttatcgcccgcaatctgacaagcatcagg
agcggccgcaccatggcggaaatcgcggcgggcgcgccggccatttcgctgaaggggaag
aagggaaaggccttcgacgcggcgatggcgcaggccgaccgggccgtcccggcgaagagg
cgcgccagggcgggatcggaccgcccgccgcccttccagccgccgcaactggcgaccctg
gtcgacgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggctatcgc
tgcctggtttcggcatcgggcgggaaggtcaggattttcacgcggtccggcctcgactgg
acggatcgcttcgcgcccctccccgccgaaatcgcggcgatgaacctgcccggcgccctg
atcgatggggaggtcgtcgcgctcggcagcgatggaaatccggatttctccacgctccag
cagctgttgaagggggaggggaaggcggcgctgcacctgttcgccttcgacctgctccaa
ctggacgggcaggatctgaccgccatgcccaatatcggccggaaggaaaagctggccgcc
ctgttgggcgaaggtgccgcgcatgtccatgtcggggaccatgtcgtcggggcgggggaa
aggctgttccaggccatgtgcggcgcggggcaggaggggatcatttcaaagcgcgccgac
gccccctatcgcggcgcgcgcacgaagaattggctgaaggtcaaatgcacccgccgccag
gaattcgtcatcgtcggctggaccctgagcggcgccagcgggcgctccatccgcaacctg
ctgctcggccagcgggagggggaggggctggtctatgcgggaaaggtcggcacgggcttc
aacgcggccaacagcgccgggctggtcgcggcgctcggcaagcgggggcgcaagaccgcc
gcgctcagcgtgccgcgcagcgaaagccggggcgcccaatgggttcgccccgatctggtc
gcggaaatcgcctttgccgaattcacggcggaaaatatcgtccgccatgccagcttcctg
ggcctgcgcgaggacaaggcggccagggaggtgcgacgcgaggaagccatgccgacgcct
gaagcccaaagttcgatccagatcagcaatcccgaccgcctgatcttcccggaggcgaag
atcaccaagggcgagcttgccgaatattacgcccgcatgggcgcggcgatgctgccctgg
atagcccgtcggccgatcagcctggtccgctgtccgcagggccgcgcgaagaaatgcttt
ttccagaagcatgacagcggcagtttcggcgaccatgtcaaacatgtcccgatccgcgag
aaggaggggaatgaggaggattatctttatatagaggatagcgatggcctgttggcctgc
gtccagatgggggcgatcgaatttcacggctggggttcgggcgtcgcggatgtcgagcgg
ccggatcgcatgatcttcgacctcgatccggacgaagggctggacttcgaggatgtgaag
aaggcggcgcgggacatccgccgggcgctggaggatatgggccttgccagcttcgccatg
ctgtcgggcggcaagggcatccacgtcgtcgtgccgctgacgccgcaggcgcaatggccg
gaggtcaaggatttcgctgaccgcttcgcccgtgccctcgccgcccaggaaccggatcgc
ttcaccgcgacgatgagcaaggcgaagcgcaagggccgcatcttcatcgactggctgcgc
aaccagcgcggcgccacggcggtgctgccctatgtggtgcgcgcccgcgagcttgcgtcc
gtcgccgcccccgtcacctgggaagagttggacgggatcgagagcgcggcgcacttcacg
gtgaaggacgccgccctcctgctcgaccgcgcctcctcgcgagacttgcgcggctggggg
gaagcgcaccagccgctgcccgctcattag
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