Sphingobium sp. TA15: Sj15T_05870
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Entry
Sj15T_05870 CDS
T11324
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spta Sphingobium sp. TA15
Pathway
spta02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spta00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sj15T_05870 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spta03021
]
Sj15T_05870 (rpoD)
Transcription machinery [BR:
spta03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sj15T_05870 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_29
NT_N
Motif
Other DBs
NCBI-ProteinID:
BDD65566
LinkDB
All DBs
Position
1:complement(593808..595853)
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AA seq
681 aa
AA seq
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MASKANGKGAGEDQDTGDAPLLDLNEASVKKLIARAKKRGYITYDELNDALPQDQMSSEQ
IEDIMSALNEMGVNIVENEEAGEDGDDQRDDGDDDSADDSADDDGSPRPVTEKKKETVDR
TDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNN
GEMQLREILDLDAMLSKDPAPENLEEGAEDDDGEISEKTAGPSFKEEEEPEEESADTDED
EDGLTERRARRMEEEEEEDNTLSLAQMEETLKPMALEKFATITEIFRTFSKAQESRMAAM
ANGETLSQKAEDDYQELREQLTAEVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLA
ERHKVSRKDFLDRYVNHELDDGWLDKVSGLDKKWAAFAAAEGRAVERIRVEVSEIAQATG
MSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLH
EQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPV
DAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEA
KALRKLKHPSRSRKMRSFLDQ
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaggcgaacggcaagggtgcgggcgaagatcaggataccggcgatgcgccg
ctgctggatctgaacgaggcgtcggtcaagaagctgatcgcccgcgcgaagaagcgcggc
tacatcacctatgacgagttgaacgacgcgctgccgcaggaccagatgtcctccgaacag
atcgaggacatcatgtccgcgctcaacgaaatgggcgtcaacatcgtcgagaatgaggaa
gccggcgaggacggggacgaccagcgcgacgacggcgacgacgacagcgcggacgacagc
gccgatgatgacggctcgccgcgtcccgtcaccgagaagaagaaggaaacggtcgaccgc
acggacgaccccgtgcgcatgtacctgcgggaaatgggggccgtggaactgctcagccgc
gagggcgagatcgccatcgccaagcggatcgaggcgggccgggacacgatgatcctgggg
ctgtgcgaaagcccgaccaccttcaacgcgatcatcgaatggtcgaccgccctcaacaat
ggcgagatgcagttgcgcgagatcctcgatctcgacgcgatgctgtccaaggatccggcc
ccggaaaatctggaggagggcgccgaggacgacgatggcgagatcagcgagaagaccgcc
ggccccagcttcaaggaagaggaggagccggaggaggaatccgccgataccgacgaggat
gaggacggcctgaccgagcggcgcgcccgccggatggaggaggaggaagaggaggacaac
accctttccctcgcccagatggaagagacgctgaaaccgatggcgctggagaaattcgcg
accatcacggagattttccgcaccttctccaaggcgcaggaatcgcgcatggccgccatg
gccaatggcgagacgctgagccagaaggcggaggacgactatcaggaactgcgcgagcag
ctcaccgccgaggtcgaaagcgtccagttccaccagcagaagatcgaatatctggtcgac
cagctctatgcctataaccggcgcctgaccgcgctgggcgggcagatgctgcgcctggcc
gagcggcacaaggtcagccgcaaggatttcctcgaccgctatgtgaaccatgagctggac
gatggctggctcgacaaggtgtcgggcttggacaagaagtgggcggccttcgccgctgcc
gagggacgcgccgtggagcgcatccgcgtcgaggtgagcgagatcgcgcaggcgacaggc
atgtcgctttccgaattccgccgcatcgtcaacatggtgcagaagggcgagcgcgaggcg
cgcatcgcgaagaaggaaatggtcgaggcgaacctgcgcctcgtcatctccatcgctaaa
aaatatacgaaccgcggcctgcaattccttgatcttattcaggaaggcaatatcggcctg
atgaaggcggtcgacaaattcgaatatcggcgcggctacaagttcagcacctacgccacc
tggtggatcaggcaggcgatcacccgatccatcgcggaccaggcgcggaccatccgcatc
ccggtccacatgatcgagacgatcaacaagctggtccgcacgtcccgccagttcctgcac
gaacagggtcgcgaaccgactccggaggagatggccgagcgcctgtccatgccgctggag
aaggtgcgcaaggtgatgaagatcgccaaggagccgatctccctggaaacaccgatcggc
gacgaggaggattcgcacctgggcgatttcatcgaggacaagaacgcgatcatccccgtg
gatgccgcgatccaggcgaacctcaaggaaaccgtcacccgcgtcctcgcgtcgctgacg
ccccgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccatacg
ctggaggaagtgggccagcagttcagcgtgacccgcgaacgcatccgccagatcgaggcg
aaggcgctgcgcaagctgaagcaccccagccgcagccgcaagatgcgcagcttcctcgac
caataa
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