Sphingobium sp. TA15: Sj15T_07730
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Entry
Sj15T_07730 CDS
T11324
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spta Sphingobium sp. TA15
Pathway
spta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sj15T_07730 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spta03019
]
Sj15T_07730 (pnp)
03016 Transfer RNA biogenesis [BR:
spta03016
]
Sj15T_07730 (pnp)
Enzymes [BR:
spta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Sj15T_07730 (pnp)
Messenger RNA biogenesis [BR:
spta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sj15T_07730 (pnp)
Transfer RNA biogenesis [BR:
spta03016
]
Prokaryotic type
tRNA degradation factors
Sj15T_07730 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BDD65752
LinkDB
All DBs
Position
1:778160..780475
Genome browser
AA seq
771 aa
AA seq
DB search
MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATGNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLD
DLKKKLKKLIGKDIAAAYKLTDKSARSSAINAARDKAKAFFAEEGLDAQSVMAGIKLTKK
LEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK
DAEQMIDGLTGLHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKE
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAVIS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDINQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPPREPRGDRGGDREG
GRGDRNRRDRGGDRGGRGGDRGPRRDRGPRGEGKGDDDGSSAGLPDFLTQD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatgtaaagaaggtatcaatcgagctgggcggcaagaccctcacgctcgaaacc
ggccgcattgcgcgtcaggccgacgccgccgtgctggcgacctatggcgaaaccgtggtg
ctctgcgccgtgaccgccgccaagtcggtgaaggaaggacaggacttcttcccgctgacc
gtccattatcaggaaaaatattcggccgccggtcgcattccgggcggcttcttcaagcgc
gagcgcggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgcccggtccgc
ccgctcttccccgaaggtttctataatgaaatcaacgtcatcgctcaggttctgagcttc
gacggggaaagcgagcccgacatcgtggcgatgatcgccgcctcggccgcgctgaccctg
tcgggcgtgcccttcctgggtccgatcggcgccgcccgcgtcggctacaaggatggcgaa
tatcagctcaacccctcgctggacgaagtgaagaccggcgaactcgacctggtcgtcgcc
gccaccggcaatgcggtgatgatggtcgaatccgaagccaaggagctttcggaagacgtg
atgctcggcgccgtcctcttcgcccatgaagcgtcgaagaaggtcgtcaacgcgatcatc
gacctcgccgaaaaggccgcgaaggatccgtgggacgtcgccaagggcgacaatctcgac
gacctcaagaagaagctcaagaagctgatcggcaaggacatcgcggccgcctacaagctg
accgacaagtccgcccgttcgagcgcgatcaacgccgcccgcgacaaggccaaggccttt
ttcgcggaagagggcctggacgcccagagcgtcatggccggcatcaagctgaccaagaag
ctggaggcggagatcgtccgcaccgccatcctcaaggaaggcaagcgcatcgacggccgc
accaccacgcagatccgtccgatcgaggcgatggtaggcttcctgccgcgcacccatggt
tcggcgctgttcacccgcggcgaaacgcaggcgatctgcaccaccacgcttggcaccaag
gacgccgagcagatgatcgacggcctgaccggcctccactatgaaagcttcatgctgcac
tataacttcccgccctattcggtcggcgaagtgggtcgcttcggcgcgccgggccgtcgc
gaagtcggccatggcaagctcgcatggcgcgccctgcaccccgtgctgcccagcaaggag
gaattcccctacacgatccgcgtcctcagcgacatcaccgagtccaacggatcgtcctcg
atggcgacggtctgcggcggttcgctctcgatgatggatgccggcgttccgctgaagcgt
cccgtctccggcatcgccatgggcctgatcctggaaggcaaggagttcgcggtcatcagc
gacatcctgggcgatgaggatcacctcggcgacatggacttcaaggtggcgggcacggaa
gcgggcatcaccaccatgcagatggacatcaaggttgccggcatcacgcaggaaatcttc
gaagtcgcgctgcgccaggcgaaggaaggccgcgcccacatcctgggcgagatgagcaag
gccctgtcctcgacccgcaccgaactgagcgcgcacgctccgcgcatcgagacgatccag
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgcgagatc
gtcgcggaaaccggcgcgaaggtcgacatcgacgacgagggcatcatcaagatcagctcg
tccgacatcaaccagatcgaagccgccaagaagtggatcctcggcatcgtcgaggaagcg
gaagtcggcaagatctacaccggcaaggtcgtcaacatcgtcgacttcggcgcgttcgtg
aacttcatgggcggcaaggacggcctcgtccacgtctccgaaatgaagaatgagcgcgtg
gaaaagccgaccgacgtcgtgtcggaaggccaggaagtgaaggtcaaggttctcgaaatc
gacccgcgcggcaaggttcgcctgtcgatgcgcgtggtcgaccaggaaaccggcgaggaa
ctggaagacacccgtccgccccgcgaacccagaggggatcggggcggcgaccgcgaaggc
ggccgtggcgaccgcaatcgccgcgaccgtgggggcgaccgcggcggacgcgggggcgat
cgcggcccgcgccgcgaccgcggtccccggggcgaaggcaagggcgacgatgacggctcc
agcgccggcctgccggatttcctgacccaggattga
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