Sphingobium sp. TA15: Sj15T_15750
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Entry
Sj15T_15750 CDS
T11324
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spta Sphingobium sp. TA15
Pathway
spta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sj15T_15750 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spta03019
]
Sj15T_15750 (rnr)
03016 Transfer RNA biogenesis [BR:
spta03016
]
Sj15T_15750 (rnr)
Enzymes [BR:
spta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sj15T_15750 (rnr)
Messenger RNA biogenesis [BR:
spta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sj15T_15750 (rnr)
Transfer RNA biogenesis [BR:
spta03016
]
Prokaryotic type
tRNA degradation factors
Sj15T_15750 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
WHD_RNase_R
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
BDD66554
LinkDB
All DBs
Position
1:1601866..1604229
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AA seq
787 aa
AA seq
DB search
MASTEKKKKTDSARTKVRPAGFPTREQVMDFIATSDQPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLIDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRLRI
VERGKRGALTIGDRILARTEEAGRGWVAHPMKKLAKASEELLGVVEEGDGGKLWLRPVDK
RIRRDTPISDAGAAKKGDLVLAEPVGRPPRITARVTDILGDPFAPRSFSLIAIHKHGIPH
VFSERVEEEAVAASSLALHEDKREDLRHLPIVAIDPVDARDHDDAVWAAPDDDPANSGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGEDRAAM
ACHLVLDASGKVKNWRFSRAVIRVAAVLAYEDAQAAIDGTLDIAADDAPARPPTPSRLRA
GELLETALKPLWACWALLRKARDKREPLALDLPERRVVLDDYGKIVSVAVRERLDAHMLI
EDYMIAANVAAAKALEAKKAPVMYRVHEPPSRDKLVALKDYLATFGIEFALGQVVRPATF
NRLIERVGEAEEKPQIMEQILRSQTQAYYAPSNLGHFGLALGSYAHFTSPIRRYADLLVH
RALVGAYGLELPAPKGDIPDRSSLSGEDMENMGRVGEMISQHERRAMEAERETIDRYVAA
FLAAHVGDLVEARITGVQSFGFFATVEGLGGDGLVPVSTLGDERFFYDEVGRALEGVESG
DRYTVGQRLALRLAEADPINGSLRFELPDAPPQRPSFKKDRVRPGSARRGRPANVRHIGS
KRGKHRR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaccgaaaagaagaagaaaaccgactccgcacggaccaaggttcggcccgcg
ggctttccgacgcgcgagcaggtgatggatttcatcgccacgtccgaccagccggccgga
aagcgggagatcgcaaaggccttcggcctcaaggggcaggagaagatcgcgctcaaggcg
ctgctcaaggacatggcggacgaagggctgatcgacatcggcccggcgcgggccttccac
aagatgggcggcgtgcccaaggtcacggtgctgcggatcgtcgatgtcgacgacaccacc
ctgatcgccacgcccgaacgctgggaggcggagggacagcccgcaccccggctgcgcatc
gtggagcggggaaagcgcggcgcgctgaccataggcgaccgcatcctggcgcggacggag
gaagccgggcgcggctgggtcgcgcatccgatgaagaaactcgccaaggccagcgaggaa
ttgctgggcgtggtcgaggaaggcgacggcggcaagctgtggctgcgcccggtcgacaag
cgcatccgccgggacacgccgatttcggacgccggcgcggcgaagaagggcgacctggtg
ctggccgagccggtggggcgcccgccccggatcacggcacgggtcacggacatattgggc
gatcccttcgcgccacgcagcttcagcctgatcgccatccacaagcatggcattccccat
gtcttttccgagcgggtcgaggaagaggcggtggccgcttccagcctggccctgcatgag
gacaagcgggaggatttgcggcatttgcccatcgtcgccatcgatccggtcgatgcgcgg
gaccatgacgatgcggtctgggccgcgccggacgacgatccggccaattcaggcggttac
aaggcgatcgtcgcgattgcggacgtcagctattatgtgcggccgggcagcgcgctggac
cgggaagcgaggaagcgcgggaacagcgtctattttcccgatctcgtggtgccgatgctg
ccgcaccagctttcgtccgacatgtgttccttgcgggcgggcgaggatcgggcggcgatg
gcctgtcaccttgtccttgacgcttcgggcaaggtgaagaactggcgcttctcccgcgcg
gtgatccgggtggcggcggtgctggcctatgaggatgcgcaggcggccatcgatgggacg
ttggatattgcggctgatgacgcgccggctcgccccccgaccccctcccgcctgcgggcg
ggggagttgctggagacggcgctgaagccgctctgggcctgctgggcgttgctgcgcaag
gcgcgggacaagcgggagccgctggcgctggacctgccggaacggcgggtggtgctggac
gactatggcaagatcgtcagcgtcgcggtgcgcgagcggctcgacgcgcatatgctgatc
gaggattatatgatcgccgccaatgtcgcggcggccaaggcgctggaggccaagaaggcg
ccggtcatgtaccgcgtccatgaaccgccgagccgggacaagctggtcgcgttgaaggac
tatctggcgaccttcggcatcgaattcgccctggggcaggtggtgaggcctgcgaccttc
aaccggctgatcgaacgggtcggggaagcggaggaaaagccccagatcatggagcagatc
ctgcgcagccagacccaggcctattatgcgccgtccaatctgggccatttcgggctggcc
ttgggttcctatgcccatttcacctcgcccatccggcgctatgcggacctgctggtgcac
cgggcgctggtgggcgcctatgggctggaactgcccgcgcccaagggggacattcccgac
cgatcctcgctgagcggcgaggatatggagaatatgggccgcgtgggcgagatgatcagc
cagcatgaacgccgcgccatggaggcggagcgggagaccatcgaccgctatgtcgcggcc
ttcctggcggcgcatgtcggcgatctggtggaggcgcggatcaccggcgtgcagagcttc
ggcttcttcgccacggtggaggggctgggcggcgatgggctggtgccggtgtcgacgctg
ggcgacgaacgcttcttctatgacgaggtcggccgggcgctggagggcgtggagagcggg
gatcgctacacggtcgggcagcggctggcattgcggctggcggaggcggacccgatcaac
ggctcgctgcgcttcgaactgcccgacgccccgccccagcggccgagcttcaagaaggac
cgggtgcgccccggcagcgcccggcgcgggcggcccgccaatgtccggcacatcggatcg
aaaaggggcaagcatcggcggtaa
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