Sphingobium sp. TA15: Sj15T_27080
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Entry
Sj15T_27080 CDS
T11324
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spta Sphingobium sp. TA15
Pathway
spta00040
Pentose and glucuronate interconversions
spta01100
Metabolic pathways
spta02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
spta00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Sj15T_27080
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sj15T_27080
Enzymes [BR:
spta01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Sj15T_27080
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GFIT
Motif
Pfam:
Pectate_lyase_4
TSP3_bac
Motif
Other DBs
NCBI-ProteinID:
BDD67687
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Position
1:complement(2751691..2753025)
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AA seq
444 aa
AA seq
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MRRLLAGMLLPVVIAGCSGAGSESRAQPVKGDPAFPGAVGYGAAAKGGRGGRILAVDTLA
DGGPGSLRACIDATGPRVCIFRVSGTIRFTTRPPVIANPYLTIAGQTAPGGGIVIAHAGG
AEGRTPILIKNTHDIVIRHVRVRNDRTGTHRGSEDSFTIENSRQVIIDHVSASWARDELI
NGYGDNDWITISNSIFAEGIPRHDKCALLASDPKGPQHLSFIGNICAHNGDRNPDLNFPP
GSCAEVINNILYNGQSEFAEIWESFGGVPVSLIGNSFIAGRNTRPDTVGVARNVMGSKGV
ARVYLADNRFDGDFVHLSPLLKEAEVDRPPCPPTVAAEPAEAAYRAVLSDAGAFPRDPFD
RRIVKQVRERKGHIVKQPGLIDDPEPGAPYADADGDGMDDLWEAEHGADPRKADPWADAD
GDGLANLDQFLDQRARDLMDGIAP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtctgctggccggcatgctgttgcccgtcgtgatcgcgggctgttccggcgcg
ggcagcgaatcgcgggcgcagccggtgaagggcgaccccgcctttcccggcgcggtcggc
tatggcgcggcggccaagggcgggcgcggcgggcgtatcctggccgtcgacacgctggcc
gacggcgggccggggtcgcttcgcgcctgcatcgacgccaccggaccccgcgtctgcata
ttccgggtgagcggcacgatccgcttcaccacgcgcccgccggtgatcgccaatccctat
ctcaccatagcggggcaaacggcgccgggcggcggcatcgtcatcgcccatgcgggcggc
gcggaagggcgcacgcccatcctcatcaagaacacgcacgacatcgtcatccgccatgtc
cgcgtgcgcaacgaccgcaccggcacccatcgcgggtcggaggacagcttcaccatagag
aatagccgccaggtgatcatcgaccatgtcagcgcaagctgggcgcgggacgagctgatc
aacggctatggcgacaatgactggatcacgatcagtaactcgatctttgcggagggcatt
ccgcgccacgacaaatgcgcgctgctggcgagcgacccgaaggggccgcagcatttgagc
ttcatcggcaatatctgcgcccataatggcgaccgcaatccggacctcaacttccccccc
ggctcctgcgcggaggtgatcaacaacatcctctataacggccagtcggaattcgcggag
atctgggagagcttcggcggcgttcccgtctcgctgatcggaaacagcttcatcgcgggg
cggaacacccggccggacacggtcggggtggcgcgcaacgtcatggggtcgaagggggtg
gcgagggtttatctggccgacaaccgcttcgacggggatttcgtccatctctcccccctg
ttgaaggaggcggaggtggaccggccgccctgcccgccgaccgtcgccgccgaaccggcg
gaagcggcctatagagcggtgctgagcgatgcgggcgcctttccccgcgaccctttcgac
cggcgaatcgtcaaacaggtgcgcgaacgcaaggggcatatcgtgaagcagcccggcctg
atcgacgatccggaaccgggagcgccctatgccgatgcggacggcgacggcatggacgac
ctgtgggaggcggagcatggcgccgatccgcgcaaggccgatccctgggccgatgccgac
ggggacggcctggccaatctcgaccagttcctggaccagcgggcgcgcgacctgatggac
gggattgcgccatga
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