Sphingobium sp. TA15: Sj15T_29030
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Entry
Sj15T_29030 CDS
T11324
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spta Sphingobium sp. TA15
Pathway
spta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sj15T_29030 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spta03019
]
Sj15T_29030 (recQ)
03400 DNA repair and recombination proteins [BR:
spta03400
]
Sj15T_29030 (recQ)
Enzymes [BR:
spta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sj15T_29030 (recQ)
Messenger RNA biogenesis [BR:
spta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sj15T_29030 (recQ)
DNA repair and recombination proteins [BR:
spta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sj15T_29030 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDD67882
LinkDB
All DBs
Position
1:complement(2969482..2971254)
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AA seq
590 aa
AA seq
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MRPDIPTLLHDIFGFPAFRGVQEQVVGRIMAGQPTLAIMPTGAGKSLCYQLPAVALDGCC
VVVSPLIALMHDQLRAAQAVGIRAASLTSVDADWRETQDRLRNGDLDLLYVAPERASGEA
FRTLLRAAKIALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFPDVPRLALTATADHHTRD
DILVQLGIPREGLIIAGFDRPNIRYAVHPRDGLARQLSDLIAGQTGPGIVYAPTRAATEK
LAETLGKTGRPTRAYHAGLDPRTRAANQAAFIASEDMVMVATIAFGMGIDKPDVRFVAHA
ALPKSIEGYYQESGRAGRDGEPAEAHLFWGADDFARARQRIGELDPLRQQGERARITALG
GLVETGTCRRAILLRHFGENPSPTCGNCDNCLNPPPSIDATQTARKFLSAVYRTGQSFGV
GHIEQVLTGAVTDKIRERGHDKISVYGIVDGEETALLRPVSRALLVRDALQTNEHGGLEF
GPNARPILRGEEEVSLVLPPRKERRRKSARNGSAENPVGDPLFDALRVCRRELAQEAGVP
PYVIFHDSTLREMAEQRPTSLTELGHISGVGQRKLDAYGDAFLAAIRPYL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcccgacatcccgaccctgctccacgatattttcggtttccccgcctttcggggc
gtgcaggaacaggtggtcggccgcatcatggcggggcagccgacgctggcgatcatgccg
accggcgcgggcaagtcgctctgctaccagcttcccgccgtggcgctggacggctgctgc
gtcgtcgtctccccgctgatcgcgctaatgcacgaccagcttcgcgccgcccaggcggtc
ggtatccgcgccgccagcctcaccagcgtcgatgccgactggcgggagacgcaggaccgg
ctgcgcaacggcgatctcgacctgctctacgtcgccccggagcgcgccagcggggaggcg
ttccgcaccctcctgcgcgccgcgaagatcgccctcttcgcgattgacgaggcgcattgc
gtttccgaatggggccatgatttccgcccggactatcgcctgctgcgcccgctgctggac
gaatttccggacgttccccgcctcgcgctgaccgccaccgcagaccatcatacccgcgat
gacatcctcgtccagctcggcattccccgcgaaggcctgatcatcgctggtttcgaccgt
ccgaacatccgctacgccgtccatccccgcgatggcctggcccgccagctttccgacctg
atcgctggccagaccggccccggcatcgtctacgctcccacccgcgccgcgaccgagaag
ctggcggaaaccctcggcaagaccggccgcccgacccgcgcctatcatgcggggctggac
ccgcgcacccgcgccgccaaccaggccgccttcatcgccagcgaggatatggtgatggtc
gccaccatcgccttcggcatgggcatcgacaagcccgacgtccgcttcgtcgcccatgcg
gcgctgcccaagtcgatcgagggctattatcaggaatcgggccgcgcaggccgcgacggc
gaacccgccgaagcccatctcttctggggcgccgacgatttcgcccgcgcccgccagcgc
atcggcgaactcgaccccctgcgccagcagggcgagcgcgcccgcatcaccgcgctgggc
gggctggtggagaccggcacctgccgccgcgccatattgctccgccatttcggggaaaat
ccgtcgcccacctgcggcaattgcgacaattgcctgaacccgccgcccagcatcgacgcg
acccagaccgcccgcaaattcctgtccgccgtctaccgcaccggccagagcttcggcgtc
ggccatatcgagcaggtgctgaccggcgccgtcaccgataagattcgcgagcgcggccat
gacaagatttcggtctacggcatcgtcgacggggaggagacggcgctgctgcgccccgta
tcccgcgccttgctggtccgcgacgcgctccagaccaacgaacatggcgggctggaattc
ggccccaatgcccgcccgatcctgcgcggcgaggaagaggtcagcctggtcctgccgccc
cgcaaggaacgccgccgcaagagcgcccgcaacggcagcgccgaaaatcccgtgggcgat
ccgctgttcgacgcgctgcgcgtctgccgccgcgaactggcgcaggaggctggggtgccg
ccctatgtcatcttccatgattcgaccctgcgcgaaatggcggagcagcgcccgaccagc
ctcaccgaactcggccacatcagcggggtagggcagcgcaagctggatgcttatggcgac
gcgtttctggcggcgatccgtccttatctttaa
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