Strongylocentrotus purpuratus (purple sea urchin): 115929146
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Entry
115929146 CDS
T01019
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115929146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
115929146
03041 Spliceosome [BR:
spu03041
]
115929146
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115929146
Spliceosome [BR:
spu03041
]
Complex B
Other components
Prp19-related factors
115929146
Complex C
115929146
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
ARM_TT21_C
TPR_12
TPR_8
TPR_15
ARM_TT21
NRDE-2
TPR_1
Motif
Other DBs
NCBI-GeneID:
115929146
NCBI-ProteinID:
XP_030853334
UniProt:
A0A7M7PKN3
LinkDB
All DBs
Position
Unknown
AA seq
854 aa
AA seq
DB search
MPISGPEHSRDLIFEEDDLAYEEEILRHPFSVKCWLRYTEHKSKGPPAGLHLIYERALKE
LPGSYKLWYNYLKLRRKAIKGRCITDPGYEDVNNAFERALVFMHKMPRIWLDYCQFLMDQ
CKVARTRRTFDRALRAMPISQHHRIWPLYLKFVRSMPLQETAVRVYRRYLKLCSENAEEY
IEYLVDILRLDEGAVRLADIVNQEAFVSKEGKSNHQLWHDLCDLICKHPTKVTSLKVDPI
IRGGIKRFSDERGKLWCSLADYYIRSGHFEKARDIYEEAIFTVKTVRDFTQVFDAYAQFE
ESMLKAKMETSAESGSTEDDDIDIELRLERFEDLMDRRPLLLNSVLLRQNPHNVHEWHKR
AKLFEGKPKEVINTYTEAVQTVTPQLATGKLHTLWVEFAKFYEKHSQIMEARVIFEKGTK
VEYMKVDELAGVWCEWAEMEIRHENYDAALKLMRRATAAPGRKAAYHDKSEPVQNRLYKN
LKLWSMYADLEESFGTFKSTKAVYDRVIDLRIATPQIIINYGMFLEENQYFEEAFKAYEK
GIGLFKWPNVYDIWNTYLTKFMERYGGKKLERTRDLFEQCLEDCPPKFTKTLYLLYAKLE
EKYGLSRHAVAVYDRATKAVLPKEQHEMFNIYIKRVAEVYGVTQTRPIYEKAVEILPDIE
AREMCLRFADLERKLGEIDRARAVYAHCSQMCDPRVTATFWQVWKDFEIKHGNEDTVREM
LRIKRSIQAKFNTQVNFMSAQMIAAEGAAKPNLAAVDDMQLLEQRAQALAAEAEADKPRL
KKDILFVRGDTEAKREAVAEATRAANPAEINIDDDEDEDSEEEVDEVNVERKSVPSEVFG
SIKAVQDEEEEDEE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgccgatatcaggacctgagcactcgagagatttgatatttgaagaggatgacttggcc
tatgaggaggagatcttacgtcatccgttctctgtcaagtgttggctgcgttataccgag
cacaaatctaaaggccccccggcaggactacatctcatctatgagagggccctcaaggaa
ttaccaggaagctacaagctctggtataactacctgaagctgagaaggaaggcgatcaag
ggccgttgcatcacggaccctggatacgaggatgtcaacaatgcctttgagagagccttg
gtcttcatgcacaagatgccccgaatctggctggactactgccagttcttgatggaccag
tgcaaggtcgcccggacgcgccggacgttcgaccgcgccctgagggccatgcccatctcc
cagcatcacaggatctggcccctctacctcaagtttgtccgctccatgccgctccaggag
acggccgtccgggtgtacaggaggtacctcaagctgtgttctgagaatgctgaggagtac
attgagtacctggttgacattttgcgcttggacgagggcgctgttcgtttggcagacatc
gtaaatcaggaggcctttgtgtccaaagagggaaaatcaaaccaccagctgtggcatgac
ctctgtgacttgatctgcaagcacccgaccaaggtcacgtcgctcaaggtcgatcccatt
atccggggagggatcaaacgcttcagcgatgagagggggaaactgtggtgctctctggct
gactactacatcaggagcggtcactttgagaaggcaagggacatctatgaagaagccatc
tttacagtgaaaactgtcagggatttcacccaggtgtttgatgcctatgctcagtttgag
gagagtatgctgaaagcaaagatggaaacctccgcggagtctggttcaacagaagatgat
gacatcgacatagagctgagactggaacggtttgaagacctgatggacagacgccctctg
ttgttgaatagtgtcctattgaggcagaatccccacaatgtccatgagtggcacaagagg
gctaaactctttgaggggaagcctaaagaagtcattaacacctacacagaggctgttcag
acggtgacccctcagctagcgacagggaagctccacacgctgtgggtggagtttgccaag
ttctacgagaagcatagccagatcatggaggctagggtgatatttgagaaaggaaccaag
gttgagtacatgaaagtagatgaactggccggagtctggtgtgaatgggcggagatggag
ataagacacgagaactatgatgctgcactgaagctgatgcgtagggcgacggcggcaccc
ggcaggaaggctgcgtaccatgacaagagtgaacctgtccagaacagactttataagaac
ctgaagctttggtctatgtatgccgatctagaggagagctttggaactttcaagagcacc
aaggcagtgtacgatcgcgtcattgatctccgtattgccacgccccagatcatcatcaac
tatggcatgttcctggaggagaaccagtactttgaggaggcttttaaggcatatgagaag
gggatcggtctcttcaagtggccaaatgtgtatgacatctggaatacctatcttacaaag
ttcatggagagatatggaggcaagaaactggagagaaccagagacctctttgaacagtgc
cttgaagactgtcctcccaaatttaccaagactttgtacctgttgtatgccaaactcgag
gagaaatacggattatcccggcatgctgtggccgtctatgacagggctaccaaagcagtg
cttcccaaagagcaacacgagatgttcaacatttacatcaagcgagttgccgaggtgtat
ggcgtcacccagaccagacccatctatgagaaagctgtggaaattctacccgacatcgaa
gccagagagatgtgcctccggtttgctgatctggaacgcaagctgggcgagatcgacaga
gcgagggcggtctacgctcactgctcgcagatgtgtgatccacgcgtgacggcaactttc
tggcaggtgtggaaggactttgagatcaagcacggcaacgaggatacggtcagggagatg
ctgaggatcaagaggagcatccaggccaagtttaacactcaggtgaatttcatgtcagct
cagatgatcgccgcagaaggagcagccaaacccaacttagctgcagtggatgacatgcag
ttactggaacagagagcacaggcacttgctgccgaggccgaggctgataaaccaagactc
aagaaagatattctctttgtcaggggtgatactgaagctaagcgggaggcggttgccgag
gcaacaagagcagccaacccggcagagatcaacatcgatgatgatgaggatgaggatagt
gaagaagaagtggatgaggtcaacgtggagcggaagagtgtcccatctgaggtgtttggt
agtatcaaagctgtccaggatgaagaggaggaggatgaagaataa
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