Strongylocentrotus purpuratus (purple sea urchin): 373267
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Entry
373267 CDS
T01019
Symbol
COLP1alpha
Name
(RefSeq) alpha-1 collagen precursor
KO
K19719
collagen type II alpha
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
373267 (COLP1alpha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spu00536
]
373267 (COLP1alpha)
Glycosaminoglycan binding proteins [BR:
spu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
373267 (COLP1alpha)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
373267
NCBI-ProteinID:
NP_999674
UniProt:
Q26634
LinkDB
All DBs
AA seq
1414 aa
AA seq
DB search
MYSFVDLAVCHRRKILLTLLVLFAVQSFSNGQAAGQYSEGPRGDKGQKGEPGDADINSAN
FPPGLPGPVGPPGPSGPSGPAGNNGPPGPNGPRGNPGMDGLTGLPGIPGPPGPPGKSGSL
VASAQTSSFNKGPSLAGYQYPQAQAAGTPGPRGPPGPPGSRGPQGLTGPSGPSGETGPSG
NSGPPGPSGLPGRPGSDGDDGTPGSQGQRGPAGTPGSRGTPGMPGAPGMKGHQGLPGMTG
SKGERGEGGERGSDGSPGPVGAPGPAGPSGQPGERGRTGPAGSQGDRGADGATGSQGPPG
STGPAGAPGMPGISGAKGDAGSPGARGSPGLQGARGERGSEGSQGQTGPPGVPGRDGSNG
AKGSAGPSGAQGTPGFPGARGPPGPAGSPGPAGSKGDQGNPGQPGAQGESGPLGPRGETG
PAGPPGAQGESGERGSRGALGPAGPPGGVGERGPMGPPGMSGAPGAPGAKGDRGLPGERG
SAGSKGSAGESGRPGEPGMPGQRGLTGPPGKQGRDGKPGPAGAPGEPGNSGPAGASGQRG
LPGLVGLPGPQGQRGERGEDGGQGSPGAPGLTGEPGKRGEPGVAGPPGPQGSAGERGNQG
PQGQAGSMGPPGPPGASGDAGAQGDNGPPGESGPEGPPGARGERGAPGERGPQGLTGAQG
RRGIGGRAGNYGATGPPGQKGEMGPPGNVGLQGPPGELGPSGPPGARGPPGPSGSPGPDG
PAGAEGDRGPVGPMGPSGPSGMPGERGDNGEPGPGGAPGQRGDPGDLGPQGSPGSPGFAG
PPGRSGNPGPQGELGPTGARGETGGPGPSGPTGDPGPQGPLGAPGQQGERGETGPQGQGG
PPGPIGSLGAPGAQGPPGPTGPSGNAGSPGQPGARGEPGQSGSPGQPGLAGRTGPSGERG
DKGNDGQSGPPGPPGPAGPAGQSGILGLAGGSGPRGPGGPAGPPGAAGSRGPAGKSGDRG
SPGAVGPAGNPGPAGENGMPGSDGNDGAPGPQGSRGEKGDTGASGANGSPGAPGPIGAPG
AAGASGPRGETGSTGAPGPLGPTGARGSTGPAGPSGPSGPAGERGETGPAGHKGHPGVSG
LPGLQGTSGPMGEPGAPGEQGQQGTRGLPGARGSNGNDGPSGPRGFDGPEGPRGPRGEGG
SSGPPGPPGPPGPPGPPGQVQSSYGVRYPSFQSGGKGQGSSPYGYAYRDDSKNDAVKIQD
TELLGAISALGQQIELIKAPQGKAKTNPARSCKDVFLNNVEAESGYYWVDPNLGCQKDAI
QVYCEAETGATCVPSTNNVVSNMTWYVGKTKRAFFSSMHGGDKFAYIEDSTQMTFLRLLS
TSARQTVTYFCKNVQGNPIFLSSSDVELVDDQDSKFNYRTLEDGCSSSSSQWGKSVYEYE
TKKTTRLPIVDFAPGEVGSESQMFGLEMGPVCFS
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtatagctttgtggaccttgctgtttgccacaggcggaagatccttctaacgttatta
gtattatttgctgtacagtcgttttcaaatggacaagctgccgggcagtattcagaaggc
cctcgcggagacaagggacagaaaggagaacctggtgatgccgatataaatagtgctaat
ttcccccctggtctaccaggaccagttggaccccctggaccatccggaccttctggacca
gctggtaacaatggaccaccaggacccaatggaccccgtggaaaccctggtatggatgga
ttgactggtctgccaggtatccctggaccccctggaccaccaggaaagtcaggatcattg
gttgcatccgcccagacctcatccttcaacaagggaccctctcttgctggataccaatac
ccacaagcacaggcagctggcacccccggaccacgtggacccccaggacccccaggatca
aggggacctcaaggtttgactggaccatccggaccttcaggagagactggaccctcaggt
aactctggaccaccaggaccatctggacttcccggacgcccaggatctgatggagatgac
ggtaccccaggctctcagggacaacgtggacctgctggaacccctggatcccgtggaacc
ccaggaatgcccggagcccccggaatgaagggacatcagggtctaccaggaatgacagga
agcaagggagagcgtggagaaggtggagagcgtggaagtgatggaagcccaggacccgtt
ggtgctccaggacctgctggaccctctggacaacccggtgaacgtggccgaactggaccc
gctggatcacagggagaccgtggagcagatggagccaccggatctcagggaccaccagga
tccaccggacccgctggagccccaggaatgcccggaatctccggagctaagggagatgct
ggatccccaggagcacgtggatcccctggactacagggagcccgtggagagcgtggatca
gagggatcccaaggacagactggaccaccaggtgtccccggacgtgatggatctaatgga
gccaagggatctgcaggaccctcaggagctcagggaacaccaggtttcccaggagcacgt
ggaccacccggacccgctggtagcccaggacctgcaggatccaagggagaccaaggaaac
ccaggacagccaggagcacagggagagtctggacctctcggaccccgaggagagactgga
cctgctggacccccaggagcacagggagagagcggagagaggggatctcgcggagcgctt
ggacccgctggacctccaggtggtgttggagagcgtggacccatgggaccccctggaatg
tctggagccccaggagcaccaggagctaagggagaccgtggattgcctggtgaacgtgga
tctgctggatccaagggatctgctggagagtctggccgcccaggagagccaggtatgcct
ggacagaggggacttacgggacccccaggcaagcaaggacgtgatggaaagcccggaccc
gctggtgcacctggtgaacctggaaactctggacctgctggagcatctggacaacgtggt
cttcccggacttgttggtctgcccggaccacaaggacaacgtggtgagcgtggagaggat
ggtggccagggatcccctggagcacctggcctgactggtgagcccggaaagcgtggagaa
cctggtgttgctggacctcccggacctcagggatctgctggagagaggggtaaccaagga
ccccaaggacaggctggatcaatgggacccccaggacctcctggagcaagtggtgatgct
ggagcacagggagacaatggaccaccaggagaatctggacctgagggaccaccaggagcc
cgtggagagcgtggcgcccctggtgaacgtggaccacagggacttacaggagcacaggga
cgacgaggaatcggtggacgtgctggaaattatggagctaccggacccccaggacagaag
ggagagatgggacctccaggaaatgttggacttcagggacctcccggagaacttggacct
tccggaccaccaggcgcccgtggaccacccggacctagcggaagccccggaccagatgga
cctgctggagctgagggagacaggggaccagttggacctatgggacccagcggaccatct
ggaatgcccggtgaaaggggagacaatggagagcccggacctggaggagcacctggacaa
cgtggagatcctggcgatcttggaccacaaggatcccctggatcacctggattcgctgga
ccacctggccgctctggaaaccctggacctcaaggagagcttggacctaccggagctagg
ggagagactggaggaccaggaccctcaggacctaccggagacccaggaccacagggacct
cttggagccccaggacaacagggagagcgtggagagacaggacctcagggacaaggtgga
ccaccaggacccattggaagccttggagcacccggagcacagggaccacccggacccact
ggaccttcaggaaatgctggtagcccaggacagcctggtgcccgtggagagccaggacag
tctggatctcctggacaacctggacttgctggaagaactggaccctctggagagcgtgga
gacaaaggaaacgatggacaatctggacctcccggaccccctggacccgctggacctgct
ggacaatctggaatccttggtcttgcaggaggctctggaccccgtggacccggtggacct
gctggaccacctggtgccgctggaagccgtggacccgctggaaagtctggagacagggga
tctcctggagctgttggacccgcaggaaacccaggacccgctggagagaatggcatgcct
ggaagcgatggaaatgatggagcccctggaccccaaggatctcgtggagagaagggagac
actggtgcctctggagccaacggatcacctggagcaccaggaccaatcggtgcccctgga
gctgctggtgcttccggaccacgtggtgagaccggatctactggtgccccaggacctctg
ggtcctaccggtgcccgtggctctactggacctgctggaccatctggaccatctggacct
gctggagagcgtggagagactggacctgctggacacaagggacatcctggagtctctgga
cttcctggtctacagggaacttctggacccatgggagagcctggtgcacccggagaacaa
ggacaacagggaactaggggattacctggtgcccgaggatccaatggaaacgatggaccc
tcaggaccccgtggatttgatggacccgaaggaccccgtggaccccgtggagaaggtgga
tcatctggaccaccaggacccccaggacctcccggacccccaggaccaccaggacaagtc
cagtcttcatacggagtcagatacccatccttccagtctggcggcaagggacaaggaagc
tctccttatggttatgcttacagagacgacagcaagaatgatgccgtcaagattcaggat
accgaacttcttggagctatcagtgctcttggccagcagattgagttgatcaaggcacct
cagggcaaggctaagaccaaccccgccaggtcatgcaaagacgtcttcctcaacaatgtt
gaagccgagagtggatattactgggtcgatcccaaccttggatgccagaaggatgccatc
caggtctattgcgaagctgagactggcgccacctgcgtaccctcaacaaacaatgttgtc
agcaacatgacatggtacgttggcaagacaaagcgcgctttcttctccagcatgcatggt
ggtgacaagttcgcctacatcgaggactctacccagatgaccttcctccgcctcctctcc
accagcgcccgccagaccgtcacctacttctgcaagaacgtccaaggaaacccaatcttc
ctctcaagctctgatgtcgaactggtcgatgaccaggacagcaaattcaactacaggaca
cttgaagatggctgctcatcctcatcatcacagtggggcaagtctgtctacgaatatgag
accaagaagacaacacgtctgccgatcgttgatttcgccccaggtgaagttggcagtgaa
agtcagatgtttggcctggagatgggacctgtgtgcttttcataa
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