Strongylocentrotus purpuratus (purple sea urchin): 580001
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Entry
580001 CDS
T01019
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03013
Nucleocytoplasmic transport
spu03015
mRNA surveillance pathway
spu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
580001
09122 Translation
03013 Nucleocytoplasmic transport
580001
03015 mRNA surveillance pathway
580001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
580001
03041 Spliceosome [BR:
spu03041
]
580001
Enzymes [BR:
spu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
580001
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
580001
Spliceosome [BR:
spu03041
]
Complex C
Other components
EJC/TREX
580001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
580001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
580001
NCBI-ProteinID:
XP_011681023
UniProt:
A0A7M7LWK3
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MADNDENEQELLDYEDEEAQETADAGGDAVKQQKETKAKGYVSIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLDPVDGQVSVLV
MCHTRELAFQIAKEYERFSKYMPTVKVGVFFGGLSIKKDEQTIKTNCPHIVVGTPGRTLA
LGRQKILNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEVRPV
CKKFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ
RCIALCQLLVEQNFPAIGIHRAMQQDERLARYQAFKTFQKRILVATNLFGRGMDIERVNI
VFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEEDAKTLNDVQDRFEVNIGELPEEI
DIASYIEQA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaatgatgagaatgagcaagagcttttagattacgaggatgaggaagcacaa
gagactgccgatgctggcggagatgcagtgaaacaacagaaggaaaccaaagccaagggt
tatgtgtccatccacagttcaggatttagggatttcttgctcaaacctgagctcctcaga
gccattgttgattgtggttttgaacatccgtcagaagttcagcacgaatgcattccccaa
gcaattctgggtatggatgtcttgtgccaagctaaaagtggtatgggtaaaacagcagtg
tttgtactggctacccttcagcagttagatccagttgatggccaggtttctgtacttgtc
atgtgccacactcgtgagctcgctttccagatcgccaaggaatatgaaaggttcagcaag
tacatgccaaccgtcaaggtcggtgtgttctttggaggcctgagcatcaagaaggatgag
cagaccatcaagaccaactgccctcatatcgtagtagggacccccggaaggacgctggcc
ctaggtcgtcagaagatcctcaacctcaagcatgtgaagcacttcatcctggacgaatgt
gacaagatgctggaacagctagacatgagacgagatgtccaggagatcttccgcatgaca
ccccatgagaagcaagtcatgatgttcagtgctaccctaagcaaggaagtgcgacctgtc
tgcaagaaatttatgcaagatccgatggaggtgtacgttgatgatgagactaagctgaca
ctccatggtcttcaacagtactatgtgaagctcaaggacaacgagaagaacaggaaatta
tttgatttattggatgtcttggagttcaaccaggttgtcatctttgtaaagagtgtacaa
cgatgcatagccctctgtcagcttttggtagagcagaacttccctgccatcggtatccat
agagccatgcaacaagatgaaagattggcgaggtatcaagctttcaagaccttccagaag
cgtatcctcgttgcaactaatctctttgggcgtggcatggatatcgagagagtcaacatt
gtcttcaactatgatatgccagaggactcggacacttacctccatagagttgctcgagct
ggccgtttcggcaccaagggtttggctgtcacgtttgtctctgacgaggaagatgccaag
accctaaacgatgtgcaagatcgatttgaagtcaacatcggcgaactgccagaagagatc
gacattgcctcatacatcgaacaagcttga
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