Strongylocentrotus purpuratus (purple sea urchin): 580266
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Entry
580266 CDS
T01019
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03013
Nucleocytoplasmic transport
spu03015
mRNA surveillance pathway
spu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
580266
09122 Translation
03013 Nucleocytoplasmic transport
580266
03015 mRNA surveillance pathway
580266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
580266
03041 Spliceosome [BR:
spu03041
]
580266
03009 Ribosome biogenesis [BR:
spu03009
]
580266
03012 Translation factors [BR:
spu03012
]
580266
Enzymes [BR:
spu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
580266
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
580266
mRNA cycle factors
Stress granule specific factors
580266
Spliceosome [BR:
spu03041
]
Complex C
Other components
EJC/TREX
580266
Ribosome biogenesis [BR:
spu03009
]
Eukaryotic type
90S particles
Helicases
580266
Translation factors [BR:
spu03012
]
Eukaryotic type
Initiation factors
eIF-4
580266
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
UvrD-helicase
AAA_22
AAA_30
TniB
Motif
Other DBs
NCBI-GeneID:
580266
NCBI-ProteinID:
XP_030854367
LinkDB
All DBs
Position
Unknown
AA seq
398 aa
AA seq
DB search
MTRRVLTQEAQNITFETSEEVEVTPTFDSLSLREDLIRGIYAYGFEKPSAIQQRAIKPVV
KGRDVIAQAQSGTGKTATFSISILQCLDTQVRETQALILSPTRELANQIQKVILALGDYM
SVQCHSCIGGTNVGEDIRKLDFGQHVVSGTPGRVFDMIRRRNLRTRAIKMLVLDEADEML
NKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQ
FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQ
KEREAIMKEFRSGASRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRYGR
KGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgtcgcgtgctaacacaggaggcccaaaatatcacatttgagacgagtgaagag
gtggaagtaacaccaaccttcgactcattatctctcagagaagatctcatcagaggaatt
tatgcatatggatttgaaaagccatctgcaatccagcagagagccatcaaaccagttgtg
aaaggaagggatgttattgcacaggcacaatctggtacaggaaagacagccactttttcc
atttcaattctacaatgtctagacacacaggtcagagaaacgcaagctttgattctctct
ccaacaagagaattggcaaatcaaattcaaaaggtcatcctagccttgggtgactacatg
agcgttcagtgccattcatgcatcggagggaccaatgtaggagaggatatcagaaagctg
gactttggtcagcatgtcgtctcaggaacacctggcagagtgttcgacatgatcaggaga
agaaacctgaggacgagagccatcaagatgctggtcttggacgaagcagatgaaatgctg
aacaaaggcttcaaggagcagatctatgatgtgtacaggtaccttccccctgcgacccag
gttgtacttttcagtgctacgctgccacatgagatcctagaaatgaccagcaagttcatg
acagaccccatcagaatcctggtcaaacgtgatgagttgactctggagggtatcaagcag
ttctttgttgccgtggagagggaagaatggaagtttgacacgctatgtgacctctatgac
acactcaccatcacacaggctgtcatcttctgcaacacaaagagaaaggtcgactggttg
acagaaaagatgcgtgaagctaacttcacagtgtcctcgatgcatggtgacatgcctcag
aaggagagagaagccatcatgaaggagtttagatcaggagctagtcgtgttctgattacc
actgatgtatgggctagaggtctggacgttcagcaggtctcgctggttatcaactatgat
ctgccaaacaaccgtgagctctacatccacagaatcggtcggtcgggtcgttacggccgt
aagggtgtggccatcaactttgtgaagagtgatgacatcagaatcctgcgtgacatagag
cagtattacagcacacagattgatgaaatgcccatgaatgttgcggatctcatctag
DBGET
integrated database retrieval system
