KEGG   Strongylocentrotus purpuratus (purple sea urchin): 582854
Entry
582854            CDS       T01019                                 
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
spu  Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    582854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spu03019]
    582854
Messenger RNA biogenesis [BR:spu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     582854
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_EML_2 CSTF1_dimer Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 eIF2A Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT140_2nd Beta-prop_EDC4L Beta-prop_VPS8 Beta-prop_NUP159_NUP214 Cytochrom_D1 VID27 Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 582854
NCBI-ProteinID: XP_030843199
UniProt: A0A7M7NXV4
LinkDB
Position
Unknown
AA seq 423 aa
MSLATMTIREKDQMYRLIISQLLHDGYHEVAQQLSKIVCVVPDCPPSDRLQKVVQLGLRA
EPDRHAPISISDTVAPATSIDLDFDTEVQSQAPEAAQYETCYVTAHKGPCRVAAWSKDGQ
LIATGSSDASIKILDVERMLAKSAASAPTTDTVESHPVIRTLYDHVDDITALDFHPSWPI
LVSGGKDCTVKLFDFSKSTVKKSAKSIQEVSPIRFTTFHPCGDFLLVATEHPTLRLYDVN
TAQCFVSCHPNDQHKGMLNMMEYSPLGNMYASCSNDGAIKLWDGVSNRCINTLKDAHGGS
PVCSVRFSRNGKYVLSSGKDSLVKLWEIGTSRTLITYTGAGSEHMKTTTQAVFNHTEDYV
FFPDEKTLSLCCWDSRNAERNKLLSLGHNNVVSCIIHSPTGPGFVTCSDDFRARFWYHRT
DAN
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgtcactggcaacaatgactataagagagaaggatcagatgtatagactgataattagt
caacttcttcacgatggttaccatgaggttgcacagcagctgagtaagattgtctgtgtc
gttcctgattgcccaccatcagatcgtcttcagaaagtggtacaactaggtctcagagca
gaaccagacagacatgcacctatatcaatatcagacacagttgctccagccacatctatt
gatctggactttgatacagaagtacaaagtcaagcacctgaagcagcccagtacgagact
tgttatgtcactgctcacaagggtccctgtcgtgtagcagcatggagcaaggacggtcag
ctgattgccacaggatcaagtgatgcttcaatcaagatcctggatgtggagcgtatgtta
gccaagagtgctgcttctgcccctaccacagacacagtggaaagccatcctgttatcaga
accctctatgatcatgtcgatgacatcacggctcttgactttcacccatcctggcctatc
ctggtgtcaggaggtaaagactgcaccgtcaagctttttgatttctcaaagtctaccgtc
aagaagtcagccaagtctatccaggaggtctctcccatcagatttactacattccatccg
tgtggagacttcttactggtcgcaactgaacacccaacactgagactttatgatgtgaat
actgctcaatgctttgtgtcttgccatcccaatgaccaacataaaggcatgctcaatatg
atggagtacagtccgcttggcaatatgtatgcctcctgtagtaatgatggagctatcaaa
ctctgggatggtgtgagtaacaggtgtatcaatacactcaaagacgcccatggggggagc
cctgtctgctcagttagattctcaagaaatggaaagtatgttctatccagtggaaaggac
tcgctggtgaaactttgggagatcggtaccagtcgaacactcattacgtatacaggagca
gggtctgaacatatgaagactacaacgcaggctgtctttaatcatacagaggattatgta
ttcttccctgatgagaagaccttgagtttatgttgctgggattccagaaacgcagagagg
aacaagctgctatctctaggtcacaacaatgtagtaagttgtatcatccattcacctact
ggaccaggctttgtgacgtgtagcgatgatttcagagctagattctggtaccatcgaaca
gacgctaactaa

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