Strongylocentrotus purpuratus (purple sea urchin): 583083
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Entry
583083 CDS
T01019
Symbol
clmdn
Name
(RefSeq) colmedin
KO
K19719
collagen type II alpha
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu04512
ECM-receptor interaction
spu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
583083 (clmdn)
04518 Integrin signaling
583083 (clmdn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spu00536
]
583083 (clmdn)
Glycosaminoglycan binding proteins [BR:
spu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
583083 (clmdn)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OLF
Collagen
Motif
Other DBs
NCBI-GeneID:
583083
NCBI-ProteinID:
NP_001073014
UniProt:
Q1PS61
A0A7M6UKQ2
LinkDB
All DBs
AA seq
794 aa
AA seq
DB search
MATDKQNECSCSFHIRILYFAFSILCFLTISMFVLTFCYVSQLRETRLCLPEASGEPYVR
GTATISQIDRSQREFAGTGGHPNAHTLNENFHQIFEDGNNLEAEKDRKHGAETGENGIYS
EKTRNLSATREEDGDISRRARRNVNGVDGRRLQVLATVPISIPLSSIANVCNWTNGECPT
GPKGNPGPVGLTGQIGQRGLPGPRGEPGVRGKRGDRGPKGQAGENGDRGARGEKGDMGLS
GPQGPPGIQGTQIDNCSCLVMNISALLQRLNELSANKTSLLNFVQMSIAKTVTCGCPGPP
GPVGPQGEVGPKGDRGLVGLTGSTGDKGERGSLIDGEGHILHGPPGPKGDQGISGSRGPK
GDPGLDGVDGIMGLPGFKGEAGPRGILGEVGDPGPMGMKGSKGDMGPMGTRGQIGYDGQK
GRKGETGIMGHRGVPGSTGPFGPKGIKGDQGKRGEVGYPGLTGSSGPPGVPGTPGREGMK
GQKGERHIYVLPGGNVPPTEYSSLTPSDSNPTTKPANIEPEKMFKIYEPIVKSQCRLTNI
SSPREIHAMTRSYGAWMKDTSMDSRHPDMIWVTMHHRGAILIEYKNLDEMKRRRLSATFA
LPFQWDGAGHVVYNGSFYYHHLNKDYIIRYDLTTGSIIERAHVPSLGYASDDLFQLSSGY
TNVDFAVDENGLWIIYPVTRPGSVGKLTVSKLDPESLEIITTITTDHNFESTANAFIVCG
VLYTTKGPHSRPSRVDFAFDLFREVVLEDISMNTQNRHRKTVMLSYNPRDRLLYGWDKGK
LLTYDVAIKEYTDD
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggccacggataaacaaaatgaatgctcatgttccttccatatcagaatcctctacttt
gctttttcaattctctgttttctcacaatttcgatgtttgtgctaacattctgctacgta
tcgcaattgcgagaaaccaggctctgcctccccgaagcttcaggggaaccctacgttcga
ggaaccgctaccatttctcaaatcgatcgctcgcaacgtgagtttgctggaacgggagga
cacccaaatgctcacactttaaatgaaaattttcatcaaattttcgaagatggaaataat
ttggaagctgagaaagatagaaagcatggtgcggaaacaggagaaaatgggatttacagt
gagaaaactaggaacttgagcgcaacgagagaggaagatggggacatttctcggcgagct
agaaggaatgtgaatggagtggatggtagaaggcttcaagtattagcaacagtgcccatt
tctattcccctttcttcaatagcaaacgtgtgcaactggacaaacggagaatgcccaaca
ggtccaaaaggaaaccctggtcctgtaggattgactggtcaaatcggtcagaggggtctt
cctggaccaagaggagagccgggtgttagagggaagcgaggagatcgaggacccaagggc
caagcgggagaaaatggagatcgaggggctcgtggtgaaaaaggagacatgggtttatct
ggaccacaaggacctcctggtattcaagggactcagattgacaactgttcatgcctggta
atgaatatatcagctcttctccagcgcctcaacgagctctcagctaacaagacgtctctc
ttgaactttgtgcagatgtctatcgcaaaaacggttacctgtgggtgccccggaccacca
ggccccgtgggtccccagggagaggttgggccaaaaggggataggggtttggtcggcctt
acaggatctaccggggataagggcgagcgtgggtctctgatagacggtgaaggacacata
ttgcatggtccacccggacctaaaggagaccaaggcatttctggttcaagaggtcctaag
ggggatccagggcttgacggtgttgatgggataatgggtctacctgggtttaaaggagaa
gctggtcctcgtggtattctgggtgaagtgggggatcctggaccgatgggaatgaagggt
tccaaaggggatatgggtccgatgggaaccaggggccagattggttacgatggtcagaag
ggtcgcaagggagaaacgggtatcatgggacacagaggtgttcctggatcaacaggaccg
tttggaccgaaaggaatcaaaggagatcagggcaagagaggcgaggtaggctaccccggt
cttacgggttcatctgggccgccaggagtgcctggaacaccaggccgtgaaggaatgaaa
gggcaaaaaggagaaaggcatatttatgtgctcccaggtggtaatgtgccgcctacagaa
tattcttctctcaccccatcggactcgaacccaacaaccaagccagctaacatcgaaccc
gaaaagatgttcaaaatctacgaaccaatcgtgaaatcacagtgccgtttgacgaatatt
tcttctccacgtgagatacacgctatgacaagatcatacggagcctggatgaaagacacc
tctatggatagcagacatcctgatatgatatgggttactatgcatcaccgtggtgcaata
ctcatagagtacaagaatcttgatgaaatgaaaaggcgtcgcctctcagcaaccttcgca
ttgcctttccagtgggatggtgccggtcacgttgtatacaatggatcgttctactatcat
catctgaacaaagattatatcattcgatatgacttgactacaggatccattattgagcgc
gcacatgttccatctctaggttatgccagcgacgacttgttccaactatcatccggatac
accaacgtcgatttcgccgtggatgaaaacggtctgtggatcatatacccagtcactcgc
cctggatcggtcggaaaactcaccgtatccaaactcgaccctgaatcactggaaatcatc
acaactatcacgacggatcataacttcgagtcaacggccaatgcgttcattgtctgtgga
gtcttgtacacgaccaaaggaccgcatagccgaccatcgagggtcgattttgcttttgac
ttgtttagagaggttgtattggaggatataagtatgaatactcaaaacagacatcgtaaa
actgtgatgctttcatataatcctcgagatagactcctctatggatgggataaaggaaaa
cttcttacatatgatgtcgccatcaaggaatatacagacgattaa
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