Strongylocentrotus purpuratus (purple sea urchin): 586001
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Entry
586001 CDS
T01019
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spu03036
]
586001
Chromosome and associated proteins [BR:
spu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
586001
microRNA pathway
RISC loading complex
586001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_dsRBD
Ribonuclease_3
Dicer_platform
Ribonucleas_3_3
Dicer_dimer
PAZ
Dicer_PBD
Helicase_C
DEAD
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
586001
NCBI-ProteinID:
XP_011668948
UniProt:
A0A7M7HHM6
LinkDB
All DBs
Position
Unknown
AA seq
1812 aa
AA seq
DB search
MDEPPSSPMGLEVIDVETPGGSSVTSQKEYTPILSFTPRHYQLELLETALEQNTTVCLQS
GTEKTFLAVMLIKELSGSVRLRLEDGGKRTIFLVNSESYLSEYGNVIHTHTDLNVKEYRN
SDKMISWDRTRWQDEIEHCHVAVMDSEIFLKLLQMSYVGLSMLNLLILDECHHTLQHLHP
YHQIMLAFKQYPRDDRPRILGLTESILKGDFKPCALEEHIDMLETSLQSKAKIATNLTSI
SKYGTKPKEAVIVCRKYEDCIELVSKLSKLLTDGLDQLNQFEYSFKARDFEGELVDCKRD
PVLPARQALMECLSTLRTIGPLGVKILIPMLVREILKLEKHEFLDVHLLFLQHATTQLRM
VERICDNALREGGNFYDLKFLTPKVRRLLEVLSGFKPKEVSPEEKAQQSTNRERANKFAS
RRKAHRSHKDIKNPRWRPIVPEDQDEDEVSDEEEEEEEDEEDVGLQQTGRSTTNLCGIIF
VEQRYTAVVMSRLFKKLSKRDPNLHFLLCSCIAMGSGRLGTTKKSAIQVQNQRRKHEEVL
RKFRRREVNVLVATSSVEDGVELPRCNGCNLVVRFDRPTSYQSYMQSKAKARAPTSHYLM
LIYEPDVQLFLVDVQCYQEFERVLNRKSKGKTQPQEEVLDLLVADKQMPAYIPKNEEGSP
RASMTTAIQIINRYCAKLPSDVFTHLTASCKMKERKGDVSPEFQATLQLPINSPIRKPIT
GPWMKRKKWATMAVAVKAATILHKAGELNDYLQPMGKESILKATDNAFNHLFADGQTRPG
TTKKRQYYDKEVAKCLQECLPQADQPCYLYSVDMSLASPLPDILNIRERRLHRPEETQQC
FGIITSKQIPKVPGFPVYTRAGELAVSITLESDVIRLSGSQIRRAQSFHGCMFSEVLRLD
KPNLELNPEKSQANYLIVPLKEGPSGGPSVIDWSFLEKVSLSSGHLDQPTQLPDYSQSQF
EFSTDILADAVVTPIYRNIDQPQRYFMADILYDLPVTSPFPSEKYETFVDYYFERYDIQI
SNFQQPLVDVDCMSSRLNLLTPRYLNHKGKALPISTGQNKKGNLQKKQYLVPELCYIYPI
PASLWRKAVCLPSILYRLNALLIAEELRVQVAEEAGIGLKTLPQEYPYPNLSFGWEGLDL
EALEKQEKEAEEEAARCEEDKDNAIHDEPKCNNNEQLKQKERAAELEVRTNKSEEHKVNE
QLNSPSNSKGEQHSGGDMSVNSTIESKEILDDGNFHLDDDGKDPQMCLGPSPTIILQSLT
MSNSSDGFNLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQVSNFNLYCLGDK
KALAHKMQVSLFDPSINWLPPCLLVKESSRPVPKEETETDPDAGFVIDTWDPSTVEGVDD
FDDDDFDSDQCWEENSDDFSDEEIDETKAECPDDFFAREEKDKEQWSFSVGDPDDVPGLT
YTGAKTQDLGSVPQLPYEIHTQHSMSDKSIADCVEALIGCYLVSCGFRSALLIMAWMGLD
VLPTIDGQSNKRNDQSSDLPAADLPVSCLYGYLKQPESPLLRSVPNAEDVLQHQLVGYDG
FEKTINYRFRDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHTNLS
PGALTDLRSALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGMDSQ
LKYSEMDGEQEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIEQYA
SDLPISPVRELLEMEPETARFGPPEKTIDGKTRVTVNVVGKGQFKGIGRNYHIAKATAAR
FALRHLKSQPKK
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggatgagccaccatcgagtccgatggggttagaggtcatcgatgtggagactcctggt
ggctcctctgtgacctctcagaaggagtacacccctatactcagctttacccccagacac
tatcaacttgaactcttggaaacggctttggagcagaacacaacagtgtgcctgcagtct
ggaacagagaagacattcttagcggtaatgctaatcaaagagctctctgggtcagtgagg
ttacgtctagaggatggaggaaagagaaccatctttcttgtcaattcagaatcctatttg
tcagagtatggcaacgtgatccacacacacactgatttaaatgttaaggaatacagaaat
agcgataaaatgatttcatgggacagaacaagatggcaggatgaaattgaacattgtcat
gttgcagtgatggacagtgagatcttcctcaagctcctgcagatgtcctatgttggactg
tccatgctcaatctgcttatcctagatgagtgccatcacaccctccagcatcttcatcca
taccaccagatcatgctagcgttcaaacagtatcccagggatgatcgccccagaattctg
gggctaaccgaatcgattctgaaaggggatttcaagccatgtgctttagaggagcacata
gatatgttagagacctcgcttcagagcaaagcaaaaatagcaacaaatttgaccagtatt
agcaaatatggcaccaagcctaaagaagcagtcatcgtctgcaggaagtacgaggactgc
attgagttggtatcaaaactatcaaagctcctcacagacggtcttgaccaactcaaccag
tttgaatactccttcaaagccagggactttgaaggtgaactagttgactgcaagcgtgat
cctgtattgcctgccagacaagccctgatggaatgcctctcgactctaagaacgatcggc
cctctaggggtcaagattctcatccccatgctggtaagagaaatactgaagcttgagaaa
cacgagttcttggacgttcacctcctgttcctgcagcatgcaaccacccagctcaggatg
gttgaaaggatatgtgacaatgccctcagggaaggaggcaatttctacgacctgaaattt
ctgactccgaaagtgaggaggctgttggaagttttaagtggattcaaaccaaaggaggtg
agcccagaagagaaagctcagcagagcactaatcgggagagggccaacaagtttgcatca
cgcagaaaggcacatagatctcataaggacattaaaaatccaagatggagacctatagta
ccagaagaccaagacgaggacgaagtaagcgatgaggaagaagaagaagaggaggatgaa
gaagatgtgggtctccagcaaactggccgctccaccaccaacctctgcggcatcatcttc
gtggagcagcgttacacggcagtggtgatgagcaggctcttcaagaagctctctaagagg
gaccccaatctccattttctcctctgtagctgcatagccatgggcagcgggaggctgggc
acaacgaagaagtctgccatacaggtccagaaccaaaggaggaagcatgaagaagtactg
aggaagttcagaaggagagaggtcaacgttttggttgctaccagctctgtggaagatggt
gtggaactcccccgctgcaatggctgcaaccttgtggtgcggtttgatcgccctaccagc
taccagtcttatatgcaatccaaggccaaggccagggcacctacatcgcactacctcatg
ctcatatatgagccggatgtacaactattccttgtagacgtgcagtgctaccaggagttt
gaaagggtcctgaataggaagagtaaaggtaagacccagccgcaagaagaggtattagac
ctcctggtagctgacaaacagatgcctgcatacatccccaagaatgaggaagggtcaccc
agggcctcgatgaccactgccatccagattataaacagatactgtgccaagctgcctagt
gatgtgttcacccatctgactgcctcctgtaagatgaaggagagaaagggtgatgttagc
ccagagttccaggccactcttcagctgcccatcaactcgcccatcaggaaacccattaca
ggtccatggatgaagcgcaagaagtgggccacgatggcagtggctgtcaaagctgctacg
attctacataaagcaggagagttgaatgactacctgcagccaatggggaaggaatcgatc
ctgaaggcaactgataatgctttcaatcatctgtttgctgatggccagacacgaccagga
acaactaagaagagacagtactatgataaagaggttgccaagtgcctgcaggaatgcctt
ccacaagcagatcaaccttgctacctgtacagcgttgacatgagcctggcctcacctcta
ccagacatcctcaacatccgggagaggagactccacagaccagaggaaacccagcagtgc
tttggcatcatcacctcaaagcaaataccaaaggtccctggatttccagtctacacccga
gcaggggagctcgccgtctccatcacgcttgagtctgatgtaattcgactaagtggctcc
cagatcaggagagcccagtccttccatggctgcatgttctctgaagtgctacgcctggac
aaacccaacctagagctgaacccggagaagagtcaagcaaactaccttatcgtgcctctc
aaagaaggtccttctggaggtccttctgtgattgactggtcattcctggagaaggtcagc
ctgagctctggtcatctcgaccaacctactcaactcccagactacagccagagccagttt
gagttctccacagacatcctagctgatgccgtggtcacacctatctacaggaacattgac
caaccccaacgttactttatggcagacatcctctacgacttacccgtgaccagtcctttc
ccatccgagaaatacgagacgtttgtagactactactttgagcggtacgacatccagata
tccaacttccagcagccgttggtcgacgttgactgcatgtcatcaaggctgaatctgttg
actccaaggtatctgaaccacaaagggaaagcattgcccatcagcactggtcagaacaag
aagggtaacctgcagaagaagcaatacctggtgcctgagctctgctacatctacccaata
cccgcatccttgtggcgaaaggccgtatgccttccatctatcctctacagactgaatgct
ctgctgattgcagaggaactcagagtacaggtggccgaggaggctggcatcggcttaaag
acacttccacaagaatacccatacccaaacctgagctttggatgggaggggcttgacctg
gaggccctcgagaaacaagagaaagaggctgaagaagaagcagctaggtgtgaggaggat
aaagataatgcaatacatgatgaaccaaagtgcaataacaatgagcagctgaaacaaaag
gaacgtgcagctgagcttgaagtgcggacaaacaagagtgaggaacataaagtgaatgag
cagctgaactcacccagtaactcaaaaggagagcaacattctgggggagatatgagtgta
aacagtactattgagagcaaagaaatcttagatgatgggaactttcaccttgatgatgat
ggtaaagacccgcagatgtgccttggacccagtcctactattatattgcagtccttgacc
atgtccaattccagtgacggtttcaaccttgaacgacttgagatgctaggagattctttc
ctgaagcaggctgtgactgcctatctatactgcacataccctcacctggatgagggcaag
ctctcatttctcaggagcaaacaggttagtaatttcaacctgtactgcttgggtgataag
aaagcactagctcataagatgcaggtatcactgtttgatccatccatcaactggctacca
ccctgcctgctggtcaaagagagctccagacctgtccctaaggaagagaccgaaaccgac
ccggatgcaggatttgtcatcgatacctgggatccctcgactgttgaaggcgtggatgac
ttcgatgatgatgacttcgacagtgatcagtgttgggaggagaatagcgatgacttctct
gatgaagagattgatgagacgaaggcagaatgtccggatgatttctttgcaagggaagag
aaggacaaggagcagtggtcattctctgtcggtgatccagacgatgtcccgggtctgacg
tacaccggtgctaaaacgcaggacttggggagtgtccctcagctgccgtatgagatccac
acccagcacagcatgtctgacaagagcattgctgattgcgtcgaggccttgatcggttgc
tacctggtgtcctgcggcttccgtagtgcccttctcataatggcctggatgggattggat
gtccttcctaccatcgatggtcaatccaataagcggaatgaccaatcctcagaccttcct
gcagctgatcttccagtgtcttgcctctatggctacctcaagcaaccagagtcccctctc
ctcaggagtgtgcccaatgcagaggacgtgttgcagcaccagcttgtgggatacgacggc
tttgagaagaccatcaactatcgcttcagggacagggcttacctgctacaggccttcact
cactcatcttaccatcgcaacagcattactgactgctatcagaggcttgaatttcttgga
gatgccttactagactacctcatcactcgccacctttatgatcatcacaccaacctctcc
cccggagccttgaccgatctccgctcggccctggtcaacaacaccatcttcgcttccttg
gccgtcaaattcaacttccacaagtacttcaaggcctatacagccaacatgtttcaagtc
attgataactttgtgaccttcgtcgacgccaagaatgaagcactgggaatggattcacag
ctcaagtacagtgagatggatggagaacaagaggagtctgaagatatcgaagtccccaaa
gctctaggagacatctttgaatcggtggctggggccatctaccttgatagtggcatgtca
ctcaatgctgtgtggaaagtctactatcccatgatgaaacaacagatagagcaatatgcc
tcagacctaccaatatctcctgtccgagaactgctagagatggaaccagaaacagcacga
tttggccctccggagaagaccatcgatggcaagacaagggtcacagttaacgtggttggc
aagggacagttcaagggtatcggacggaactaccacatcgccaaggcaacagcagctcgt
tttgctctgcgccacctcaagagccagcccaagaagtga
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integrated database retrieval system
