Strongylocentrotus purpuratus (purple sea urchin): 762385
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Entry
762385 CDS
T01019
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spu
Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
762385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spu03019
]
762385
03041 Spliceosome [BR:
spu03041
]
762385
03009 Ribosome biogenesis [BR:
spu03009
]
762385
03016 Transfer RNA biogenesis [BR:
spu03016
]
762385
Enzymes [BR:
spu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
762385
Messenger RNA biogenesis [BR:
spu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
762385
Spliceosome [BR:
spu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
762385
Complex C
U4/U6.U5 tri-SnRNP related factors
762385
Ribosome biogenesis [BR:
spu03009
]
Eukaryotic type
Pre-60S particles
Helicases
762385
Transfer RNA biogenesis [BR:
spu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
762385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
762385
NCBI-ProteinID:
XP_030852152
UniProt:
A0A7M7PIV5
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MGDAFGDDLFSVFDGETSSKTSKETTDSKNESSKSNEALGSSSNKRPAESSSTSDPAEVK
RPKVSLITEELNLAEILPQVKTHDVECLEGCTHEVAIPIEEEYKPLEPTTKKAAKDYPFI
LDPFQKEAIKCLENNQSVLVSAHTSAGKTVCAEYAIAMSLRDKQRVIYTTPIKALSNQKY
RELFEEFQDVGLMTGDVTINPSASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRD
KNRGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYRPVPLQHY
IFPAGGDGLHLVVDEKCEFRQDNFNAAMQVLRDGGDAAKGDQRGRRGGTKGPSNIFKIVK
MVMERSFQPVIVFSFSKKECEAYGLQVSKLDFNTQEEKTLVVEVFNNAMDCLSEEDKKLP
QVENVLPLLKRGVGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVIFT
NPRKFDGKDFRWITSGEYIQMSGRAGRRGLDDRGIVILMIDEKMSPGVGKDILQGQPDPL
NSAFHLTYNMVMNLLRVEGINPEYMLERSFFQFQSYTAIPELFEKLRKLEEEYNTMTIPQ
EDSVESYYKIRQQLKKLAKEIQAFITKPKYCLPFMQPGRLLKVKNGEDLFGWGVVVNFRR
KANQKMNNPKDDSPLYIAEVLLNCSQESVKNAASESAKPPKEGEKGEMTVVPIMLHLISE
VSSVRVYLPKDLRPPDNRQSVGKSIQEVQRRFPDGLPLLDPVEDMGIKDEALRKVVEKVE
AFEERMYSHKLHTDPELEKLYGLYEKKAQLADQIREAKRELKKARTIIQMDELKCRKRVI
RRMGFATPADVIETKGRVACEISSADELVLTEMIFNGLFNPLTAEECVTLMSCFVFEEKS
KETPKLTSQVATALRQLQDTARRIAKVSMEAKLEIDEEDYVMSFKSTLMEVVYAWASGAS
FSQICKMTDTFEGSIIRCMRRLEELMKEMCHAAKAIGNTELENKFAEGIVKIKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgcgtttggtgacgatctattcagtgtttttgatggtgaaacatcttcaaaa
acttccaaagaaactacagactcaaagaatgaatcatcaaagagtaatgaagctttaggc
agctcttcaaataagagacctgctgagagttcatcgacctctgaccctgcagaagtcaag
aggcccaaagtatctctcatcacagaagaactcaatttggcagagatcctaccccaagtg
aagacccatgatgtggagtgtcttgaggggtgtactcatgaagtggccataccgatcgaa
gaagaatacaaacctctggaaccaaccactaaaaaagcagcaaaggattatccattcatt
ctagatcccttccagaaggaggccatcaaatgtcttgaaaacaatcaatcggtgctggtt
tctgctcacacctcagctggaaagacggtctgtgcagaatacgctatagccatgtctctg
agagacaagcagagagtgatatacaccactccgatcaaggccctgagtaaccagaagtac
agagagctgtttgaagagttccaggatgttggtctgatgacaggagatgtgaccatcaat
ccatcggctagttgcctcatcatgactacagagattttacgtagcatgttgtatcgaggg
tcagagatcatgcgagaggtcggctgggtcatctttgatgagatccattacatgagagac
aagaatcgtggtgtagtttgggaagaaaccatcatcctccttccagacaatgtccactat
gtgtttctatctgctaccattcctaatgctaagcagtttgcagagtggatctgccacctt
cacaagcagccttgtcatgtggtatacaccgagtatcgtcctgtaccactgcagcattac
atcttcccagcgggaggtgatggacttcatcttgtcgtggatgagaagtgtgagtttcgt
caggataacttcaacgctgccatgcaggtcctgagagacggaggagatgcggccaagggt
gaccagagagggcgacgtggaggcacaaaagggccctccaacatctttaagatcgtcaag
atggtgatggagagaagcttccagcctgtgatcgtcttcagcttcagcaagaaggaatgc
gaggcgtacggccttcaggtttccaagctcgacttcaacacccaggaggagaagacactg
gtggtagaggtctttaacaacgccatggattgcctctcggaggaggataaaaaactccct
caggttgagaatgtcctgccactcttgaagagaggagtagggatacaccactccggtctt
ctgcctatcctgaaagagaccatcgagatactgttctctgaaggactcatcaaggctctt
ttcgctaccgagaccttcgccatgggtctcaacatgcccgccaggacagtgatcttcacc
aatccacgcaagtttgatggcaaggattttagatggattacatctggtgagtacattcag
atgagtgggcgtgcaggaaggcgtggtctagatgacaggggcatcgtcatcctcatgatc
gatgagaagatgagccctggcgtcggcaaggacattctccagggtcagccggaccctctg
aacagtgccttccatctgacctacaacatggtgatgaacctgttgagggtcgaaggcatc
aacccagagtacatgctggagaggtctttcttccagttccagagctacacagccattcca
gagctctttgagaagctgcggaagctggaggaggagtacaacaccatgacgataccccag
gaggacagcgtggagtcttattacaagatcagacaacagcttaagaagcttgccaaagag
atccaggctttcatcaccaagcccaaatactgtctgcccttcatgcagccaggcaggtta
ctcaaggtaaagaacggcgaggatctctttggatggggcgtggtcgtgaacttccggagg
aaagcaaaccagaagatgaacaaccccaaagacgactcacccctctacattgcagaggtc
cttctcaactgctcccaagagagcgtcaagaacgcagcctcggaatcggccaagccaccc
aaggagggcgagaaaggagagatgacagttgtacccataatgcttcacctgatcagtgag
gtgagcagtgtccgagtctacctgcccaaagacctaaggcctccggacaatcgacagagc
gtgggcaagtcaattcaggaggtccagagaagattccctgatggcctacccctcttagac
cctgtggaggacatgggcattaaagacgaggcactcagaaaagtggtagagaaagtagag
gcttttgaggagagaatgtactcacataaactgcacaccgaccctgagttagagaagctc
tatggtctgtatgagaagaaagcacagcttgcagaccagataagggaagccaaacgagag
ctgaagaaagccaggacaatcatccagatggacgaactcaaatgcagaaagagggtcatc
aggagaatgggctttgctaccccagctgatgtcatcgagacaaaggggcgtgtcgcttgt
gagatcagcagtgctgatgagcttgtgctaacggaaatgattttcaacggtctgtttaac
cccctgactgccgaggaatgtgtcaccctgatgagctgctttgtgtttgaggagaagagc
aaggagacacctaagctcaccagtcaggtggcaacagcactcagacaactccaggacact
gcccgcaggatagccaaggtgagcatggaagccaaactggagatcgatgaggaagactac
gtcatgtccttcaagtcgaccttgatggaggtggtctatgcctgggcttcaggggcctcc
ttctcccagatctgcaagatgacagacaccttcgagggcagcattatccgctgcatgaga
cgtctggaggagctcatgaaggagatgtgccacgcggccaaggccatcggcaacacagaa
ctggagaacaagtttgcagaaggaattgtcaagatcaagcgtgacatcgtcttcgctgca
agtctctacttataa
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integrated database retrieval system
