Sinomonas puerhi: AB5L97_04430
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Entry
AB5L97_04430 CDS
T10941
Name
(GenBank) DNA repair helicase XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
spue Sinomonas puerhi
Pathway
spue03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spue00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AB5L97_04430
09124 Replication and repair
03420 Nucleotide excision repair
AB5L97_04430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spue03021
]
AB5L97_04430
03400 DNA repair and recombination proteins [BR:
spue03400
]
AB5L97_04430
Enzymes [BR:
spue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB5L97_04430
Transcription machinery [BR:
spue03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AB5L97_04430
DNA repair and recombination proteins [BR:
spue03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AB5L97_04430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XDP46266
UniProt:
A0AB39L5Y9
LinkDB
All DBs
Position
complement(968548..970263)
Genome browser
AA seq
571 aa
AA seq
DB search
MSDGPLIVQSDKTILLEVDHPQATEARHEIAAFAELERAPEHVHTYRLTPLGLWNARAAG
LDAERVLNTLLTYSRFPVPHALLIDIDETMSRYGRLWLEKDPVHGLVLRSDDFPVLEEVH
RAKKIAPMLGPRIDARTTVVLSSQRGALKQALLKIGWPADDRAGYVDGTPHPIALTETVP
ATAAGDAHDGGESPASSVPPPATGGWSLRPYQRVAAENFWAGGSGVVVLPCGAGKTLVGA
AAMAQSSTTTLILVTNTVSARQWRSELLKRTSLTEDEIGEYSGAVKEVRPVTIATYQVLT
SKRGGLYPHLELLDKNDWGLIIYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREG
EVFSLIGPKRYDAPWKDIEAQGYIAPADCVEVRVDLPRDERMAYAMADDADKYRLCAGSE
TKTAVVERLVARHADEQLLVIGQFLDQLGEIGERIGAPVITGATSVKERQRLFDAFRAGE
ERRLVVSKVANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPKADGRAARFYALVAR
DTLDQDFAAKRQRFLAEQGYAYRILDARDIP
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacggacccctcatcgtccagagcgacaagaccatcctgctcgaggtcgaccac
ccgcaggccaccgaggcgcggcacgagatcgccgcgttcgccgagctcgaacgcgccccc
gagcacgttcatacctaccggctcacgccgctcggcctgtggaacgcccgcgccgccggg
ctcgacgccgagcgcgtcctcaacacgctcctcacctattcgcggttccccgtcccgcat
gcgctcctcatcgatatcgacgagacgatgtcccgctacgggaggctgtggctcgagaag
gatccggtccacgggctcgtgctgcgctccgacgatttcccggtgctcgaggaggtgcac
cgggccaagaagatcgcgcccatgctcggtccgcgcatcgacgcgcggaccaccgtggtc
ctctcgtcccaacgcggcgcgctcaagcaggccctgctcaagatcggctggcccgcggac
gaccgtgcgggctacgtcgacgggaccccgcacccgatagcgctcaccgagactgtgccg
gccaccgctgccggtgacgcacacgacggcggggagtcgccggcgtcgtccgtcccaccg
cctgcgaccggcggatggtccctgcgcccgtaccagcgagtggcggcggagaacttctgg
gctggcggcagcggcgttgtcgtgcttccgtgcggcgcggggaagaccctcgtgggcgcg
gccgcgatggcgcagtcctccacgacgacgctcatcctcgtcaccaacactgtgtccgcg
aggcagtggcgctcggagctgctcaagcgcacctcgctcaccgaggacgagatcggcgag
tactcgggcgccgtcaaggaggtccggccggtcacgatcgcgacctaccaggtcctcacc
tccaagcgcggcgggctgtatccgcacctcgagctgctcgacaagaacgactggggcctc
atcatctacgacgaggtgcacctcttgcccgcgccgatcttccgcatgacggcggacctc
caggcgcggcgtcgtctcggtctcaccgcaaccctcgtgcgcgaggacggccgcgaaggc
gaggtgttctcgctcatcgggcccaagaggtacgacgcgccctggaaggacatcgaggcg
cagggctacatcgcgcctgccgactgcgtcgaggtgcgcgtcgatctccctcgcgacgag
cgcatggcgtacgcgatggcggatgatgcggacaagtaccgcctgtgcgcggggagcgag
accaagacggccgtcgtggagcggctcgtggcccggcacgcggacgagcagctgcttgtg
atcgggcagttcctcgaccagctcggggagatcggcgagcgcattggggccccggtcatc
accggcgccacgagcgtcaaggagcggcagcggctgttcgacgctttccgtgcgggggag
gaacggaggcttgtggtctcgaaggtcgcgaatttctcgatcgacctgcccgaggcgtcg
gtggcgatccaggtctcgggctctttcggctcgcggcaggaggaggcccagcggctcggg
aggctactgcggcccaaggcggacgggcgcgcggcgcggttctacgcgctcgtggcccgg
gacacgctcgaccaggacttcgcggcgaagcggcagcggttcctcgcggaacagggatac
gcgtatcggatcctcgacgcccgcgacatcccgtga
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