Sinomonas puerhi: AB5L97_10570
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Entry
AB5L97_10570 CDS
T10941
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spue Sinomonas puerhi
Pathway
spue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB5L97_10570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spue03019
]
AB5L97_10570
03009 Ribosome biogenesis [BR:
spue03009
]
AB5L97_10570
Enzymes [BR:
spue01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB5L97_10570
Messenger RNA biogenesis [BR:
spue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB5L97_10570
Ribosome biogenesis [BR:
spue03009
]
Prokaryotic type
rRNA processing factors
AB5L97_10570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
XDP43759
UniProt:
A0AB39KYP7
LinkDB
All DBs
Position
complement(2326699..2330196)
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AA seq
1165 aa
AA seq
DB search
MDIEQQPGGSTPDAAPADQQDKPRRTSRRRSASAPTGAPAATADATAAPVDAAPVDVAPA
AGPGEDAAAGEAPASPAKRATRSRRKAAAPTEEAEDTTPETATADSSNATAAVADLPAAE
DSTEPEAAPGEKPAQARSRRRTSARAAAVKAETSLPERQEPEPEETKPAAEPVRDEPAAA
RRAKSSVRARRRASTSAGPTAAEPAPTTQAEPQPQTGKAVAEEKPARAGRARTARGAASA
AAATSDQRGADRETAPVTPTAGTTTAGTTTAEATIAEGTAIAAASANGAEPEDVSEKPQG
ARGVLFSEQLSPTSMIFQAPDLSTIVRPTPAVEPVDEEEQDENDDDTDVASRRRRRSRGR
RSRTARGAEGAEGSEEQGEEDGEAHEEESEEVTSRRRRRRRRGDVDLELEGGLDDDPPGT
VTRVRAPRTPSESTSTRVQSVKGSTRLEAKKQRRRESRESGRRRHVITEAEFLARRESVD
RQMVVRQNEDRIQIAVLEDGLLAEHFVSKTQQDSLIGNVYLGRVQNVLPSMEAAFVDIGR
GRNAVLYAGEVNWDAAGLDGAPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGR
YLVYVPGGSMTGISRKLPDVERTRLKKILKDRLPEDAGVIVRTAAEGASEEELTHDINRL
RSQWESIQGQATSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGDEAWDTIEAYVT
YVAPDLLGRLEKYQGDEDIFAQWRVDEQIHKALDRKVFLPSGGSLVIDRTEAMTVVDVNT
GKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVE
CLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSETCEVCAGRGVITYDEPVERGNGR
PSAPAVEHQAPRVTEVNGAAAGRKRRRRGGGQPADAPATPAAAPEPPVDDAERQARAQAT
RAALAAVAAAAHAAHAHDADMHPEAHTEATEHAGAPSAPVQAPVPAAGTEAPQKSPTAAV
AASAPAAQAEATHAADVVRVPAGDAEHLSVLTIGGERIELPHGDVVHEPPAPEPVLSLDA
LSQAFDQITGERHTTSEGEARPGRRRSRGARSGQGSAEVTRVEASEGAVGGQTRSASPAP
RTEPQTPPEDGGPLILGVGVPASEL
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgaacagcagcccggcggctcgaccccggatgcagcaccggcggaccagcag
gacaagccccgccgtacctcccgccgccgtagcgcctcggcgcccaccggcgcccccgcc
gcgacggcggacgccactgcggcacccgttgacgcggcaccggtcgacgtggcccccgcg
gcaggtcccggtgaggacgcggccgctggcgaggccccggcctctccggccaagcgggcg
acccgcagccgccgcaaggccgctgctccgaccgaggaggccgaagacaccacgccggag
acggccaccgcggacagctcaaacgccaccgcggccgttgcggaccttcctgcggccgag
gattctaccgagccggaggccgcacccggggagaagccggcgcaggcgcggtcgcggcgc
cgcacgtcagcccgcgcagcggccgtcaaggcggagacgagcctccccgagcggcaggaa
cccgagcctgaagaaacgaagccggccgccgagcccgttcgcgacgagccagccgcggca
cggcgtgcgaagagttcggtccgcgcccgccggagggcatcgacgagcgctgggccaacc
gctgccgagcccgcacccaccacgcaagccgagccgcagccgcagacggggaaggccgtc
gccgaggagaagcccgctcgagcagggcgcgcacgcaccgcccgcggcgcggcttccgcg
gcagccgccacctccgatcagcgaggcgcagaccgcgaaaccgcgccagtgaccccgaca
gctgggaccactacggcagggaccaccacagcagaggccacgatcgcagagggaaccgca
attgccgcggcctcggccaacggcgccgagccggaggacgtgtctgagaagccccagggc
gcacgcggggtgctgttcagcgagcagctttccccgacctcgatgatcttccaggcgccg
gacctcagcaccatcgtccggcccactcctgccgtcgagcccgtcgacgaggaagagcag
gacgagaacgacgacgacaccgatgtcgcgagccgccgccgccgccgtagccgggggcgc
cggagccggaccgctcgcggcgccgagggtgctgagggctccgaggagcagggcgaagag
gacggcgaggcgcacgaggaggagtccgaggaggtcacctcgcgccgtcgtcggcgccgt
cgtcgcggagacgtggacctcgagctcgaaggcggtctcgatgacgatccgcccggaacg
gtcacccgcgtccgggcgccgcggacgccgtcggagtccacgagcacgcgtgtccagagt
gtcaagggctcgacccgcctcgaggcgaagaagcagcgccgccgtgagtcccgcgaatcc
ggccgccgtcgtcacgtgatcaccgaggccgagttcctggcccggcgcgagtcggtggac
cggcagatggtggtccgccagaacgaggaccgcatccagatcgcggtcctcgaggacggt
ctgctcgcggagcacttcgtgtccaagacccagcaggactcgctcatcggcaacgtctat
ctgggccgggtgcagaacgtgctcccgtccatggaagcggccttcgtcgacatcgggcgc
ggccggaacgccgtgctgtacgcgggagaggtcaactgggacgcggcagggctcgacggc
gccccgcgccgtatcgagaacgcgctcaaatccggagactccgtcctcgtgcaggtcacg
aaggatccggtcggccacaagggtgcacgcctcacgagccagatctccctgccggggcgc
tacctcgtgtacgtacccggcggctccatgaccggcatctcgcgcaagctgcccgacgtc
gagcgcacgcgcctgaagaagatcctcaaggaccgactccccgaggatgccggcgtcatc
gtccggaccgccgccgagggggcaagcgaggaagagctcacgcacgacatcaaccgtctg
cgctcccagtgggagtcgatccagggccaggccacctcaaccaaggtcctcgcccccgag
ctcctctacggcgagccggacctgaccatcaaggtggtccgcgacgtcttcaatgaggac
ttctcgaagctcatcgtgagcggcgacgaggcctgggacacgatcgaggcctacgtgacc
tacgtggccccggacctgctgggccggctcgagaagtaccagggtgacgaggacatcttc
gcccagtggcgcgtcgacgagcagatccacaaggcgctcgaccgcaaggtgttccttccc
tcgggcggctccctcgtgatcgaccggaccgaggccatgaccgtggtcgacgtcaacacg
ggaaagttcacaggctcagggggcaacctcgaggagacggtgacgaagaacaacctcgag
gccgctgaggagatcgtccgccagctgcggctgcgcgacatcggcggcatcatcgtgatc
gacttcatcgacatggtgctcgaatccaaccgcgatctcgtcctgcgccgtctcgtcgag
tgcctcggccgcgaccggaccaagcaccaggtcgccgaggtcacctcgctcggcctcgtg
cagatgacccgcaagcggatgggaacagggctcctcgaggtcttcagcgagacctgcgag
gtctgcgcgggccgcggcgtcatcacctacgacgagccggtcgagcgcggtaatggccgt
ccctcggccccggccgttgagcaccaggcgccccgcgtcaccgaagtcaacggtgccgct
gctggccgtaagcgccgccgtcgggggggcggccagccggccgatgcccccgcgactccg
gccgcggcgccggaaccccctgtcgacgacgccgagcggcaggcccgcgcccaggccacc
cgggctgcccttgcggcggttgcggccgcggcgcacgcggcgcacgcccacgatgccgac
atgcatcctgaggcccacaccgaggcgacggagcatgccggggcaccttcagcaccggta
caggcaccggtgccggctgctgggacggaggcgccccagaagtcgccgaccgccgcggtc
gcggcctctgcaccggcggcgcaggccgaggccacccacgcagcggacgttgtccgcgtg
ccggcgggagacgcggagcacctctctgtcctcaccatcggcggcgagcggatcgaactc
ccgcacggagacgtcgtccacgagccgccagcgccggagccggtcctgagcctcgacgcc
ctgagccaggccttcgaccagatcaccggcgagcgccacacgacatccgagggggaggcg
cgcccgggccgccgccgctcccgcggtgcgcgcagcggccagggttccgccgaggtgacc
cgcgtggaagcgtccgagggcgccgtcggcggccagacccgctccgcgtcaccggcaccg
cgcaccgaaccgcagacgccgccggaggatggcggtccgctcatcctcggggtcggcgta
ccggcgtcggagctgtag
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