Semicossyphus pulcher (California sheephead): 138583601
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Entry
138583601 CDS
T10596
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138583601 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spul03021
]
138583601 (smarcc1a)
03036 Chromosome and associated proteins [BR:
spul03036
]
138583601 (smarcc1a)
Transcription machinery [BR:
spul03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138583601 (smarcc1a)
Chromosome and associated proteins [BR:
spul03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138583601 (smarcc1a)
PBAF complex
138583601 (smarcc1a)
GBAF(ncBAF) complex
138583601 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
BRCT
Motif
Other DBs
NCBI-GeneID:
138583601
NCBI-ProteinID:
XP_069511594
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MATAAATAGGTGSGGPATGPAGGGAVVGRKKDGGPSTKFWESSETVSQFETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPSPSQQEEEEWLRPVMRKDKQVLVHWGLSPDSYDTW
VYASEVDGDVEDPPSTDRPWKVHAKWVLDTDAYNEWMNEEDYEVDENKKLVNFRQRIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSMSKNANSKKDNENTPVKGGNVADLDDMEDDSVLSGGKD
DEEQGKAEVNRLIDAGEDNVTEQTHHIIIPSYGAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDHD
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQQMPNFIDKGKDKAIDLQNFGLR
SDLYNKKNPKGKAVNSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLR
LPIEDPYLESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETPEAEKMDK
DSDSQQADKAEMKDEAEKPSESAEKSSDKTDATEKVKKEGAEASEREEENEEGGEAKTSP
ADKDKEEAMETSSSEQEKEKDEKAATEEGEDKRKKLEHDIEEGNIATAAAAALASAATKA
KHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQA
FHMEQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGQAPGSGPHSGPPPPGMHPGGPQPHH
GGPVPHHGGPPPGGAMHPGYPPMGHHPMAPHHPGQTGPMGPGQPMPGRMMPGPPSAGPPP
GGMPPMMPPRHPGAPNGMYPGPPPAQPEPVPAVPVGPPAPPSARVSEN
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcggcaacggctggcggaacgggctcaggcggaccggctaccggccca
gccggcggaggtgccgtagtaggtcgaaagaaggacggtggcccttcaacgaaattttgg
gaaagttcagagacggtatcccaattcgagacggtgcggctgtggatcggaaagcactac
aagaagtatgtccagaatgactccccctccagtaaatccttggcgggtctggtggtccag
ctgctgcagttccaggaggacgcatttgggcgcagagtcaacaatcctgctcttaccaag
cttcctgcaaagtgtttcctggatttcaaggcaggaggtgccctctgtcacatcttgggg
tcggtctacaagtttaagagcgagcaggggtggcgcagatttgacctgcagaatccttcc
cggatggacaggaacgtggaaatgttcctaaatgtcgagaagaacctggtccagaacaac
tgcttgactcgaccgactgtgttcctgtcgcctgacatcgagcagaaacaagccagtaag
ctgaaagacatcatcaaaaggcaccagggctccatcactgatgataaatctaaagccacc
caccacatttacccctctccatcccaacaagaagaagaagaatggcttcgtccggtcatg
aggaaagacaagcaggtgctggtgcactggggtctctccccagacagctatgacacctgg
gtgtatgccagtgaggtggatggggatgtggaggacccgcccagcactgacagaccgtgg
aaggtccatgccaagtgggtgttagacactgatgcctacaatgaatggatgaatgaagaa
gactatgaggtggatgagaataagaagctagtcaatttccgccaaaggatctttcctaag
gaagaggagtcttcccgtacacccgatcgaaaggagcgcaaggccaactccgccggcaag
aagaggaggcgctcgccttcgccgcccagcactcctgctgaatcccgcaagaagggagga
aagaaggggaacccggggcctcactggaagcgtcggggccacagaggcgaagaggaggac
acggaggaggacatgaccaaggacatggacgactcctcggctggtgccagcatggaggag
ggcagcatgtctaagaacgcaaattcaaagaaagacaacgagaatactcctgtgaaagga
gggaacgtggccgacttggatgacatggaggatgactctgtgctgtctggtggaaaggat
gatgaggagcagggcaaagctgaggttaaccgactgatcgatgctggcgaggacaacgtg
actgaacagactcatcacatcatcatccccagctacggcgcctggtttgactacaactgc
atccatgagattgagagacgagcccttcccgagttcttcaacggcaaaaacaagtccaaa
actccagagatatacctggcgtaccgtaacttcatgatcgacacatatcggctaaaccct
caggagtacctcacctccacctcctgtcgaaggaacttgactggggacgtctgtgccatc
atgagggttcatgcgttcttggagcagtggggtttggtgaactaccaagttgaccatgac
agtcgcccattacccatgggccccccacctacacctcatttcactgtactggctgacaca
ccatctggcctcatgcccctgaaccacagacccccaccgattccccctcagcagcaaatg
cccaacttcatagacaaaggcaaagacaaggccatcgacctgcagaacttcggcctgcgc
tctgacctctacaacaagaaaaaccccaagggtaaagcagttaactccaccagggattgg
accgagcaggagactctgctgctgctggaggccctggagatgttcaaagatgactggaac
aaagtgtcagagcacatcggttcacgcacccaggacgagtgtatccttcacttcctgcgg
ctgcccatcgaggatccatacctggagagcaccgaggcctccctgggccctctggcctac
cagcccatccccttcagccagtctggcaaccccgtcatgagcacagtagccttcctggcc
tctgtggtcgaccccagagtggcgtcagctgctgcaagggcagctctagaggagttctca
cgtgtgcgtgaggaggtgcccgctgagctggtggaggctcacgtcaagaaggtgcaggaa
gcggccaggagcacggggaaggtggaccccgccttcggcctggagagcagcggcatcgcc
ggcaccgcccccgaggagcctgaaaagaccgaaaccccagaggcagagaagatggacaaa
gattcagactcccagcaggccgataaggcggagatgaaggacgaggcagagaagcccagc
gagtctgcagagaagagcagcgacaagacggacgccacagagaaggtgaagaaggaggga
gcggaggcctcagagcgcgaggaggagaatgaagagggaggggaggccaagacgtctcca
gcagataaggacaaagaggaggctatggagacgtcgtcctcagaacaggagaaggagaag
gatgagaaggcagctaccgaggagggagaggacaagaggaagaaactggagcacgacatc
gaagagggaaacattgcgactgcagctgctgctgctctggcgtctgctgccaccaaggcc
aagcacttggcggcggtggaggagagaaagatcaagtccctggtggcccttctggtggag
acccagatgaagaagctggagatcaagctgaggcacttcgaggagctcgaaaccatcatg
gaccgagagaaagaggcgttggagctccagcggcagcagctcctcaccgagcgtcaggcc
ttccacatggagcagctgaagtacgcagagatgaaggcgaggcagcagatggagcagcaa
gccgctgctgcagccgcagccgccgcccaggctcaaggacagggacaggctcctggatct
ggaccccactccgggccccctccaccaggcatgcaccctggagggccccagccacaccat
ggaggaccagtaccccaccacggagggcccccacccggcggtgccatgcatcccggctac
ccccccatgggtcatcacccaatggccccgcaccacccaggacagacaggaccgatggga
ccaggtcagccgatgcctggacgcatgatgcccggcccaccctctgctggcccccctccc
ggcggcatgcctcccatgatgcccccacgtcatcctggagctcccaacggcatgtaccct
ggccctccacctgcacagcctgaaccggtacctgcagttcctgtgggtcctccagcgccc
ccgagcgcacgagtgtctgaaaactaa
DBGET
integrated database retrieval system
