Semicossyphus pulcher (California sheephead): 138585155
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Entry
138585155 CDS
T10596
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138585155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spul03021
]
138585155
03019 Messenger RNA biogenesis [BR:
spul03019
]
138585155
Transcription machinery [BR:
spul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138585155
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138585155
U7-dependent histone pre-mRNA processing factors
138585155
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
138585155
NCBI-ProteinID:
XP_069513529
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MAAKRKSDITVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPDEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVDIEVHNPKNTEAVTLNFRGEKLAKVMGSLTDR
KCVQGQRVSGILIKRNFNYHIVTPSDLSNYTDLSMGTVTQSQAIPYTGPISLLVSQLRSL
TGDVEQVEGAEKITLRIFKSITLVHEAGMVLLEWLANPLNDMYADVVATVVLEVQSNPNA
QKFLEGKKEMFDMDVFVERLMLMLHDMFGDDCVNFKDGTDLSVTVDGVTAFIDTETRAVS
CTEDESLREMVEVAVHRLYDALSPTCDVSSRERRPPVSDVVSDVVSDVVSDVVSDVVSDV
ISVQSEMMMKT
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaaacgtaaatctgacatcacggttcctgcggaggaaagtgaccagctgctc
atccgcccgctaggagcaggacaggaggtgggacgatcatgcatcatcctggagttcaaa
ggaagaaagattatgttggactgtgggatccatcctggtctggagggaatggacgcgctg
ccgtacatcgatctgatcgacccggctgaaatcgacctgctgctcatcagccacttccac
ctggatcactgcggagctctgccctggttcctgcagaagaccagctttaaaggacgcacc
ttcatgactcacgccaccaaagccatctatcgctggctgctgtccgactacgtcaaagtc
agtaacatctcggcagacgacatgctgtacacggagacagacctggaggagagcatggag
aagatcgagaccatcaacttccacgaggtgaaggaagtggccggcatcaagttctggtgt
taccacgccggtcacgtgctcggagccgccatgttcatgatcgagatcgccggagtcaag
ttgttgtacacaggggacttctcccgtcaggaggacagacatctgatggcggcagagatc
ccgagcgtcaaaccggacatcctcatcactgagtccacgtacgggacacacatccacgag
aagcgcgaggagcgcgaggctcgtttctgtaacacggtccacgacatcgtgaacagggag
ggccgctgtctgatccccgtcttcgctctgggacgagcccaggagctgctcctcatcctg
gacgagtactggcagaaccacccggagctccacgacatcccaatctactacgcctcgtct
ctggccaggaagtgcatggccgtctaccagacttacatcaacgccatgaacgacaagatc
cgcaaggccatcaacatcaacaaccccttcgtcttcaagcacatcagcaacctcaagagc
atggatcactttgacgacatcggccccagcgtggtgatggcgtctcctggcatgatgcag
agcggcctgtccagagagctgtttgagagctggtgcaccgacaagaggaacggagtcatc
atcgccgggtactgtgtggagggaacgctcgccaagcacatcatgacggagccggatgag
atcgccaccatgtccggtcagaagctccctctgaagatgtctgtggactacatctccttc
tctgctcacaccgactaccagcagaccagcgagttcatcagggcgctcaaacctccgcac
gtgattctggtccacggtgagcagaacgagatggcccgtctgaaagcggctctgatccgc
gagtacgaagacaacgacgaggtcgacatcgaagtccacaaccccaaaaacactgaggcc
gtcacgctcaacttcagaggagagaaactggcgaaggtgatgggctccctgactgacagg
aagtgtgttcagggtcagagggtctcggggatcctcatcaaacgaaacttcaactatcac
atcgtgacgccctccgacctctccaactacacagatctgtctatgggcacagtgacacag
tctcaggccatcccgtacaccggacccatctccctgctggtcagccagctccgcagcctc
acaggagacgtggagcaggtggaaggtgcagaaaagatcaccttgcggatctttaagagc
atcacactggttcatgaggcgggcatggtgctgctggagtggctcgccaacccgctcaac
gacatgtacgctgacgtggtcgctacggtggtcctggaggtccagtccaacccaaacgcc
cagaaatttcttgaaggcaagaaagaaatgttcgacatggacgtgtttgtggagagactg
atgctcatgctgcacgacatgttcggggacgactgcgttaacttcaaagacggtacagac
ttgagtgtgacggtggacggagtcaccgccttcatcgacacggaaaccagagcggtgtcg
tgcacagaggacgagtctctgagggaaatggtggaggtcgctgttcaccggctctacgac
gccctcagccccacctgtgatgtcagtagccgggagcggcggccacctgtcagtgatgtc
gtcagtgatgtcgtcagtgatgtcgtcagtgatgtcgtcagtgatgtcgtcagtgatgtc
atcagcgtgcagagcgagatgatgatgaagacctga
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integrated database retrieval system
