Semicossyphus pulcher (California sheephead): 138588228
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Entry
138588228 CDS
T10596
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
138588228 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spul03400
]
138588228 (msh6)
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
138588228 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
138588228
NCBI-ProteinID:
XP_069514289
LinkDB
All DBs
Position
Unknown
AA seq
1382 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKPSPSPAEADLPSSVEKSNSSPKEQAKQTPQQQPTKTNK
VKPKGSSKPAKGGFNKLFGDKAPASKEGSTTCSLNAGALVWTKLEGHPWWPCMVVPQPLT
GQQMRGRGRAQRIHVHFFDEPPTRGWVSTKYVREYQGSDSSDAKTGGVFFSGKPVIRHAM
ELADGVMFDSPEKRLKMPLCMDPSDEEDDEEDEEMELDKSTLTDEEITDDEEQKNEHMKS
PKVAQRSSRASKEKGNEAKRRRIIIASDSDGSDEEFKPDHAASSSEDEEEEGTVSSAEEG
EESAQESEADSPVKPLKRKRPAEKPAPTKAKTPLIQANTPKRAPAAVTADTKSRLSAFSA
PENFESQTNGSGASGGATVWDHEKLDWLQEGRRKDSGRRRQSEDDYDPTSLYVPEDFLNR
NTPGMRRWWQLKSKMFDTVIFYKVGKFYELYHMDAVVGVNELGLTFMKGTWAHSGFPEIG
FGRFSDGLVQKGYKVARVEQTETPEMMEARCKSMAKPTKFDKVVRREVCRIITRGTQTYS
VLDGAPSESQSKFLLSLKEKAEEESSGRCRTYGVSFVDTSVGCFHVGQFPDDRHCSRLRT
LIAHFAPAEVLFEKGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTFSEEDYFR
EAGKDQGTGSSFLPALLKNMTSESDSLGLTPKEGYEMALSALGGCIFYLKKCLVDQELLS
MANFEEYVPVDVEMEKAAGPASFFAKTRQRMVLDGVTLANLEIFQNGTGGTEGTLLERLD
TCSTPFGKRLLKQWLCAPLCNPTSIRDRLDAVEDLMAAPAQASEVSDLLKKLPDLERLLS
KIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIVSVLAPVSEESR
SALLRQVVTLKSEKEGLFPDLSAELKRWESAFDHQKARTTGVITPKTGFDPEYDQALTEI
KRCEGDLQDYLDRQKKRLGCKNMSYWGTGRNRFQMEVPDSISERNIPEEYEVKSTKKGWK
RYVTKETERLFSELQGYEEKRDAALKDCMRRLFYNFDKNYKDWKTGVECMAVLDVLLALS
RYSQGGDGPMTRPQVVLPEGDDKVAPFLDLTGSRHPCVTKTFFGDDFIPNDVYIGCPGSS
ENEEDNGHASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFSPVDRVFTRLG
ASDRIMAGESTFFVELSETASILHHATTHSLVLLDELGRGTATYDGTAIASAVVKELAEK
ICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFISGACPKSY
GFNAARLASLPEEVIQSGHRKAREFERSTISLRLFKKLCQFAEDATQGNTHFSSLVQMLN
SL
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcccttttcaatttcttcaccaagtctccgccgccggtgtccaag
ccgaagccgagtccctctcctgccgaggcagacctgccgtcctcggtggaaaagtccaac
tcctctccgaaagaacaagctaaacagacccctcaacaacagccaaccaagaccaacaaa
gttaaaccgaaaggtagctcaaagcctgctaaaggaggattcaacaagctgttcggagac
aaggccccagcaagcaaggaaggcagcaccacatgttccttaaacgctggcgcccttgtg
tggacaaaactggaaggacacccctggtggccgtgcatggtggtacctcagcctctgact
ggacagcagatgaggggccgagggcgcgcccaacgtatacatgtccatttctttgatgaa
ccccctaccagaggatgggtcagcaccaaatatgtccgagagtaccaaggctctgacagc
agtgatgctaaaacaggaggggtgttctttagtggcaaacctgtgatccggcatgcgatg
gagctcgctgatggagttatgtttgacagccctgagaaaagattaaagatgcctctctgt
atggatccatctgatgaggaagacgacgaggaagatgaagaaatggagcttgacaagtca
acattgaccgatgaagagatcactgatgatgaagagcagaaaaacgagcacatgaagtca
cccaaggtcgctcaacgatcatctcgtgcttcaaaagaaaaaggaaatgaggccaagcgc
cgtcgcatcatcatagcctcagacagcgatggatcagacgaggaattcaaaccagatcat
gctgcttccagcagtgaggatgaggaggaagaaggcacggtgagcagtgcagaggaggga
gaggagagcgctcaagagtcagaggcagatagccctgtaaagccgttaaagcgcaaacgt
cctgcagaaaagcctgctcctacaaaagcaaagacacctttaatccaggctaacacacca
aagcgagccccagcagccgttacagctgacacaaagtctcgtctgtcggctttctctgct
cctgaaaacttcgagagccagacaaacggttcgggagccagtggaggggccacagtctgg
gatcacgagaagctggattggttgcaggaaggcaggaggaaggacagtggaagacggaga
cagtcagaggacgactatgatcccaccagcttgtatgtgcctgaagactttctgaacaga
aacactcccgggatgcgtcggtggtggcagctcaaatctaagatgttcgataccgtcatt
ttctacaaggtgggaaagttttatgagctgtaccacatggacgccgtggtcggagtaaac
gagcttggactgacgttcatgaaggggacctgggcacactcgggctttccagagattggc
tttggtcgtttctcagacggactggttcagaaaggctacaaggtggctcgtgtggagcag
acagagaccccagagatgatggaagcacgctgtaagtccatggcgaagcccacaaagttt
gacaaggttgtaagaagagaagtgtgccggataatcacgaggggcacccaaacatacagc
gtgttggacggtgctccctctgagagccagagcaagttcctgctgagtttaaaggaaaag
gctgaggaggaaagctccgggcgctgccgcacctacggggtctccttcgtcgacacctct
gtgggttgtttccacgttggtcagttcccagacgaccgtcactgctctcgtctgcgcacc
ctgattgcgcactttgctcctgctgaagtgctcttcgaaaaggggaacccatctgttgaa
acacgcaaaatactcaaagcgtctctgtcgtcagctctgcaggaaggactgaacgcaggc
acccagttctgggacgcccagaagacccttaaaaccttttcagaagaagattacttcaga
gaggccggaaaggatcaggggacagggagcagtttccttcctgctcttctaaaaaatatg
acctctgagagtgattccctgggcctcactcctaaagagggctacgagatggctctgtcc
gctctgggtggctgcattttctacctgaagaaatgtctggtagatcaagagctgctctcc
atggccaactttgaagagtatgtccccgttgatgttgagatggagaaagctgccggacct
gccagtttcttcgctaagactcgtcagcggatggtcctcgatggagtgactctggccaac
ttggaaatctttcaaaacggcacaggaggaaccgaggggacgctgctggagcgcctggac
acctgctccaccccatttggtaaaaggctgttaaagcagtggctctgtgctcctctgtgt
aaccccacatccatcagggacagactggacgcggtggaagatctgatggcagctccggcc
caggcttctgaggtgtcagacttgctgaagaagctcccagatctggagcgtcttctgagt
aagatccacagcattggtactcctctgaaggggcaggatcaccccgacagcagagccgtt
ctctacgaggaggtcacctacagcaagcgcaagatagcagacttcctctcagctctggaa
ggcttcaagactatgcaggagatcgtttcagtccttgctccagtttcagaggagtctcgg
tccgcattgctccgccaagttgtaactctaaaaagtgagaaggaaggcctctttcctgac
ctctctgctgaacttaaacgctgggagtctgccttcgaccatcagaaagctcgcaccacc
ggtgtcataacccctaaaactggctttgacccagagtacgaccaggctctgaccgagata
aagaggtgtgagggggatctgcaggactacctggacagacagaagaagaggctcggctgc
aaaaacatgagctactggggaaccgggcgaaaccgcttccagatggaggtgccggacagc
atctcggagaggaatatcccagaggagtacgaggtgaagtccacaaagaaaggttggaag
cgctacgtgacgaaggagaccgagcggctgttctcagagctgcagggatacgaggagaag
agagacgctgccctgaaggactgcatgaggaggctcttctacaactttgacaagaactac
aaagactggaagacgggcgtcgagtgcatggcagtgctggatgtgctgctggccttgtcg
cgctacagccagggcggagacgggccgatgaccaggccacaggtggtgctccctgagggc
gacgacaaggtagcgcccttcctcgacctcaccggatcccgccacccttgtgtcaccaag
acctttttcggcgacgacttcatccccaatgacgtctacatcggctgcccaggaagcagc
gaaaacgaggaggataacggtcacgcctcgtgtgtcctcgtcacaggaccgaacatggga
ggaaagtctactctcatgagacagtgtggactcgtgatcatcctggctcagctgggttgc
tacgttcctgcagagagtctgcgcttctccccggtcgacagggtcttcactcggctggga
gcctccgatcgtatcatggccggagagagtaccttcttcgtggagctcagtgagacggcc
agcatcctgcaccacgccaccacacactcccttgtgctcctagatgaattaggaaggggc
acagccacatatgacggcacagcgattgccagcgctgttgtgaaggagcttgctgagaag
atctgctgccgtacgctcttctccacacattaccactccctggtggaggactacgccaac
aaccctgctgtgaggctgggccacatggcgtgcatggtggagaacgaatgcgaggatccg
agtcaagagaccatcacgttcctctacaaattcatctccggtgcttgtccgaagagttac
ggcttcaacgccgctcgactcgccagcctgcctgaggaggtcatccaatcaggacacagg
aaggcgcgggagtttgagaggagcaccatcagcctccgactcttcaagaagctgtgccag
tttgctgaagacgccacacagggaaacacacacttttcttcacttgttcagatgctgaac
agcctgtag
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