Semicossyphus pulcher (California sheephead): 138588720
Help
Entry
138588720 CDS
T10596
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138588720 (col17a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138588720
NCBI-ProteinID:
XP_069515061
LinkDB
All DBs
Position
Unknown
AA seq
1821 aa
AA seq
DB search
MELQELTGQMDFSGGLSEQRVVTETITSTTRLTSLPPKGTSGSNHRNMSSGAGGLGLEKN
VLTQNSSGTYFSSSSVGVNTSNYSSSSGVYLGGGSSGEGDGGGSYIDGDLFGVGIGGGGG
GGGGGGGGGGGGGGGSGRAGGSYMVSSVSKVRSSSSGGARRAQTAGSAGGLSPAFRERKT
ISSRSGGYDGSSSGNSSPEFTRKDYGIYCSGTTRGRSESRESEIRARLQSASPTACRWTE
LDDVKKLLKGRSCSVSPTRSSSASTTLPVPKKATVETKTISVATQSGSPPLSSGVRSGRF
HTIETSTLFDTGLTNGHYDTGVKSGQYDASLKSGQYDTGVKSGQYDVTLKSGQYDTGVKS
GQYDTGVKSGQYDVTMKSSQYDTGLKTGQYDTSLRTGQYDTSLKSGQYDTSMRTGQYDTL
DAILPSFTWSTSTLPAASASAVTGSTSSYSYQVGTNNMGGSSSPVGLTSPSSLSVYGFQN
NLAPTSASVLTTSGANVNANLGGYGVQKNVSNSGGVVSTGVSTTTRTQTDDGFKKDYKFL
ISDKENAPLKRDTEMLILAKDSGKQFTSSSSVQMGGGSLSGDSIKKEKLISSYTETMPLK
TETGNSYYGSSGVVMKDKATYAEIHRDSGVFGGGGGLCCCSDSCCSWWKWLLGLLLLSLL
LLGLLFGLIALAEDVRKLKNRVSTLEAESSVTAARTSRLSGSDNDIHLGGAGGGSHTDIH
LAAGGAGGGGKTRIAVAGAGGGTSGNGLELGLGGGSAGTGGGVGAGGTSSGRAGATAAGG
VSSGSAGSTSSSFGTGNGLGTGVSGGHVDAASLQLMIQNMLRNEMQSQTFRALIASSAQG
ERGMPGPKGDHGFPGLAGAPGAPGHVGPEGAKGQKGIQGDHGVDGIPGIRGREGPAGPRG
EPGPSGVGPKGDRGAPGDPGVPGPVGLAGLKGENGPPGLSGPSGPPGAQGFRGEAGLPGT
KGDRGLPGFNGQKGETGDKGLRGLQGEAGLTGQQGPAGEKGPKGSMGLSGHDGVKGSRGD
QGVAGPPGLRGPAGPPGDNGLPGQPGLQGPPGIGGIPGRPGAKGETGDAGRIINAAGSTS
VGIPGPPGPSGPPGPAGPPGLSGPIGPAGLPGQPGPKGDKGYKGDQGEQGIIVRTSETVR
SSSTGSLGSSGGFSAQSGPPGPPGPPGRPGDSRIGPPGPPGPQGQPGYGRPGPKGDKGDA
GFASSSGTYYTGQPGPPGPAGPKGSSGSPGPRGYQGEQGQQGVPGIPGRPGSSERVSYSG
SHATPGPPGPPGPPGLPGPQGHKGDTGFPGIPGSSRGSISVASGPPGPPGPPGPQGPQGS
FSSSSEMRQYISDYLTRSRQSVVQGPPGPPGPPGIPGTFSGSMEDISTRIIAYIQRSGSG
LSIGVQGPPGPPGPPGPGSGSFSVSGLIAMLQRDDVRRYLSGPPGPQGPAGPPGASGDVS
GSYNVEVVARYVFDIMNKRGIAQGPPGPPGPPGPSVAYGAGGTGFTATIDYSELARNPDF
RSWINSVTQHGPPGPPGVPGQPGPAGPAGPQGPPGYSSSTVYGVGAGTGTGSGTRGYSLE
EIQRYLQGSGFRGLQGPPGPQGPQGPQGPPGSYSGTISYNGNLQRESIRAEVQDYLTSDN
VRRAIIGPPGPPGPRGHKGERGEPGYIQSYAQGHSYSQGDSRSGSRRSDVDISQLAEHMD
YSSVAIKVTDYIKNQGLLQEYLVDGPSKANVRAIQGPVGPPGPPGPPGVSRVIGAYGNVT
ADLMDFFRRYGTIPGPPGIAGLKGDRGYPGPRGDKGDRGQPGLPGLPGSYSVQIPHRIQK
RDAENKVVGRHRKPRRQAHGA
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atggagttacaggagttaacaggacagatggacttctctggaggcctttcagagcagagg
gtcgtgacagaaactattacctccaccacccggctgacttctctaccaccaaagggaacc
agcggatcaaatcacaggaatatgtccagtggtgctggagggctgggcttggagaagaat
gtcctaacccagaacagcagtggaacttatttctcttcatcctctgtaggtgtgaacacc
agcaactacagctcctcctcaggtgtttacctcggaggaggctcctcgggtgaaggcgat
ggaggggggagctacattgacggagatttgtttggagttgggataggaggaggaggagga
ggcggaggaggaggagggggaggaggaggagggggaggaggaggaagtggcagagcgggc
ggcagttacatggtgagctccgtgtcaaaggtcaggtccagctcttcaggcggtgccagg
cgcgcacagaccgctggctcagcaggaggcctgtcgccagctttccgggagaggaagacc
atatcgagccgctcaggaggttatgacggaagttccagtggtaactcctctcctgagttc
actcgcaaagattatggaatctattgctccggcaccacaagagggaggagcgaaagcaga
gagagcgagatcagagccagattacaaagtgcctctcccacagcctgcagatggacggag
ctggatgacgtaaagaagctgctgaagggacgttcctgcagcgtcagccccacccgttcc
tcgagtgcctccaccacactgcctgtgccgaaaaaggccaccgttgaaaccaagaccatc
tcagtggccactcagtcgggttcacctccactgagctctggtgtgagatcaggccggttt
cacaccattgaaacatcaactctgtttgatacaggtctgacaaatgggcactatgatact
ggtgtaaaatcaggccagtatgatgcctctctaaaatcaggccaatacgatactggtgta
aaatcaggccagtatgatgtcactctcaaatcaggccaatatgatactggtgtgaaatca
ggccagtatgatactggtgtgaaatcaggccagtatgatgtgactatgaaatcaagtcag
tatgatactggtcttaaaacaggccagtatgacaccagtttgagaaccgggcagtacgac
accagtttgaagtcggggcagtacgacacaagtatgagaacaggccagtatgacacgctg
gacgctattcttccatccttcacttggtccacctccacgctgcccgctgcctcagcgtcg
gcggtcaccggcagcaccagcagctactcttaccaggtcggcaccaacaacatgggggga
tcctcctcaccagtcggcctcacctcaccctcgtcactgtcagtgtacggctttcagaat
aatctggcgcccacctctgccagtgtgctcaccaccagtggagctaacgttaacgctaat
ctaggaggctatggcgttcagaagaacgtgtcaaacagtggtggtgtcgtcagcactgga
gtctctacaaccactcgaacccaaactgatgacggctttaagaaagactacaagttcctc
atctctgacaaggagaacgctccgttaaagagggacacagaaatgctgattttggccaaa
gacagcgggaagcagttcaccagcagcagcagcgttcaaatgggaggagggtcactatcg
ggagattcaataaagaaagagaagcttatctccagctacaccgagacgatgccgctgaag
acagagacagggaactcttactatggatcatcaggagttgtaatgaaagacaaagccacc
tatgcagagattcacagggacagcggcgtcttcggtggaggtggaggactgtgctgctgc
tccgactcctgttgctcctggtggaagtggctgctgggtcttctgctcctctccctgctc
cttcttggactcctgtttgggctcatcgcactggctgaggacgtgagaaagctgaagaat
cgagtttctaccctggaggctgagtcctcggtgactgctgctcgtaccagtcggctgtca
ggttccgacaacgacatccatttgggcggtgccggaggtggatcccacactgacatacac
ctggccgctggaggagcaggtggaggcggcaaaacacgaatcgcggttgctggagcaggt
ggcggcactagtggaaacggacttgagctcggccttggaggtggatctgcgggcacaggc
ggaggtgttggggctggtggaactagcagtggcagggctggcgcgaccgctgctggaggc
gtcagcagtggcagcgcaggcagtactagtagcagttttggcactggcaatggcctcggt
accggtgtcagtggaggacatgttgatgctgcgtctcttcagctgatgatccagaacatg
ttaagaaacgaaatgcagtcacagacattcagagctcttatagcatcgtcggcgcaggga
gagagaggaatgcctggacctaaaggagatcatggtttccctggacttgcaggtgcacca
ggtgctccgggacatgtaggacctgaaggtgctaaaggacagaaaggaatccaaggtgat
catggagtggatgggataccaggtatcagaggtcgcgagggcccagctggccccagaggt
gagcccggaccttcaggcgttggaccgaaaggcgacagaggtgctcctggagatcctgga
gttcctgggcctgtgggtctggctggacttaaaggtgaaaatggacctcctggactttct
gggccatcaggtccaccaggcgctcagggtttccgtggcgaggcagggctgccaggaact
aaaggtgacagaggccttccaggatttaatggacaaaaaggtgaaactggtgacaaaggt
ctcagaggtctgcaaggtgaagctggtttaacaggtcagcaagggccggcaggagaaaaa
ggacctaaaggatcaatgggattgtctggacatgatggtgtcaaaggatcaagaggtgac
caaggtgttgctgggccgcctggactcagaggtcctgctgggcctcctggcgataatgga
cttccaggacaacctgggctgcaaggacctccaggcattggagggattccaggaagacca
ggtgccaaaggtgaaactggtgatgcaggaagaattatcaacgcagctggctccacttct
gttggcatcccaggaccaccagggccttctggtcctcccggccctgcaggacctccagga
ttatcaggtcccattggccctgctggtctgcctggccaacctggtcctaagggtgacaag
ggatataagggagaccagggagaacaaggaattatagtgagaacgtctgaaaccgtgcga
tcatccagcactggcagtctgggtagttccggaggattctcagcacagtctggaccaccc
ggcccacctggtcctcctggacgtccaggtgattcaagaattggacctccaggaccacct
gggcctcaaggtcagccaggttatggaagaccaggacctaaaggggacaaaggggacgca
ggctttgcatccagctctggaacgtactacactggacaaccaggaccacccgggcctgcc
gggcctaaaggatcctcaggttctcctggaccgaggggataccaaggtgaacaaggccag
caaggtgtaccaggcattccagggagaccaggaagctctgagagggtatcatattccgga
tcgcacgcaacccctgggccacccggtcctcctgggcctcctggacttcctggaccacaa
ggacacaaaggggacaccggatttcctggaattccaggctcttcaagaggctccatctca
gtggcatcaggtcctcctggtcctcccggtcctcctggcccacaaggtccccaaggctcc
ttctcttcctctagcgagatgcggcagtacatcagcgactacctaactagaagcagacag
tctgttgtccaaggacctccaggtccacctgggccccctggaatccccggaaccttctca
ggctccatggaggacatctccactcgaatcattgcgtacattcaacgttcaggttcaggc
ctcagcattggcgtccagggtcctccaggtccacctggtcctcctggacccggatctgga
tccttctcggtcagtggtctcatcgccatgcttcagagagacgatgtgaggagatatttg
tcaggaccaccagggccacaaggaccggccggacctccaggggcgtcaggagacgtctct
ggcagttacaatgtggaggtggtcgccagatacgtcttcgatatcatgaacaagagaggg
attgctcaaggtcctcctgggcctcctggtccacctggtccttcagtggcttatggcgcc
ggaggaactggcttcacggctacgatcgattattctgaactggccagaaaccctgatttc
cgctcttggataaactctgtcacacaacatggtcctcctggtcctcctggggtcccaggg
cagcctggccctgctggccctgctggccctcaggggccgccgggatactcctcttccacc
gtgtacggagtgggagcgggaacgggaacgggatcgggaacgcgtggctacagcctggag
gagattcagcggtacctgcagggctctgggttcagaggtctccaaggtcctcctggtcct
cagggtccacagggaccacagggtccaccaggcagttactctggaacgatttcctacaat
ggaaacctccaacgagaaagcatccgcgctgaagtacaggactatctgaccagcgacaac
gtccgtcgtgccatcatcggacctcccgggcctcctggaccgaggggacacaaaggagag
cgtggcgagccgggttacatccagagctacgcgcagggtcacagctactctcagggcgac
tctcgctccggctccaggcgctctgacgtcgatatcagccagctcgctgagcacatggac
tactccagcgtcgccataaaagtcacagattacatcaagaatcaaggcctgctgcaggag
tatctggtcgatggtccttccaaggcgaatgtcagagccattcaaggccccgtcggtcca
cccggccctcccggaccacctggtgtgagccgcgtcatcggagcctacggcaacgtcaca
gctgacctcatggacttcttcagaagatacggcaccatccccggccctccaggaatcgct
ggactaaagggagacagagggtatccaggacccagaggagacaagggtgatcgtggacag
ccaggtttaccaggactacccgggtcatacagtgtccagattccacacagaatacagaag
agggatgcagagaataaagtggtcggtcgtcacaggaagcctcgccgtcaagcccacggc
gcctaa
DBGET
integrated database retrieval system
