Semicossyphus pulcher (California sheephead): 138588911
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Entry
138588911 CDS
T10596
Name
(RefSeq) collagen alpha-1(XIX) chain
KO
K24340
collagen type XIX alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138588911
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138588911
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138588911
NCBI-ProteinID:
XP_069515264
LinkDB
All DBs
Position
Unknown
AA seq
1076 aa
AA seq
DB search
MICLLRWTAFLWTVNSIPFTFGMAVSERTDGSCPPMNVEEHRFSDVLDRPLQITGFDLTE
KFLLRKGTVTEDLPSFRLGSSPLIKPTKDIFPNGLPSEYSLVTILRVRRTTKKDRWYLWQ
VFDQSGGSQVSVVVDGGKKAVEFSSQGQLKNTLRYTFKSRDLHALFDRQWHKLSISVQSN
IVSIYMNCKLIERRLTDERDGIDPSGRTLITTRVEDGRPVDVEVRQILLYCDPYMAEMEN
CCELQEPSCETKGTFNGTSPPLVTAQLPQMLSQPPKQSIDRCHCPAEKGDSGEVGLQGNP
GHKGELGSEGQKGIDGEKADKDCFKGDQGSRGEKGEKGSAGVPGQPGEPGKEGKRGRRGK
TGEPGPRGLPGPSATSEGASVKGEKGETVVPVGKGEKGDTGQPGAEGASGTKGEKGDVGP
PGPPGPVMTAHGLRLSGTDEMKEGTLDGEKGDQGERGVQGPQGSKGNMGPPGLKGDLGPE
GKQGLPGLPGLLGEPGSPGEPGVPGRDGLKGEKGDSGGVMGLQGPPGPKGEPGEPGGGYM
GDGLSLPRGSRGPKGERGVPGLPGDHGEKGEPGAGIIGSPGPMGPPGKPGPEGLRGPPGF
SGPPGVPGREGSPGRPGPPGPAGPPGEPTALPIVGDMGAILKNACSSCQTRVPGLPGQKG
EKGSPGAQGVEGLVGEKGDPGVRGPMGNPGKEGPKGVKGERGFPGPTGDKGDEGPSGVPG
LPGVTGRTGAPGILGRPGPMGQTGGKGDRGNEGPPGRPGLPGPPGVPYVEGNGMSSLYKL
QSGGAILGPPGAPGAPGPKGDDGHSGEPGAMGLPGLEGLPGSKGDIGLPGPAGISGPSGK
PGTRGEPGIPGEPGERGPLGETGFPGPEGPQGVAGRAGKDGTPGYKGVTGRTGDRGSKGE
RGDPGIPGERGVQGERGRAGDSGPLGPIGPIGRKGDPGPPGQLGSANLLGDPGFMEELKM
FIRSEVLRVFEEKLSGTAMPQKTPAGILASQIQGPPGPPGQNGLQGPPGEPGPPGSQGYR
GQKGERGQLGLGLPGDPGVMGPPGHPGIPAQGPPGSPGPRGPPGTCDPSDCLLPSL
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgatttgcttgttaagatggacggctttcctctggactgtaaattccattccgttcact
tttggaatggcagtgagtgaacgaacagatggctcatgtccacctatgaatgtagaggaa
cacaggttttctgatgtcttagatcgtcccctgcagatcacaggttttgatctcacagaa
aagtttcttcttcgaaagggaacggtcacggaagacctgccgtcctttcggttaggaagc
agtccgctcattaaaccaacaaaagatatatttccaaatgggcttccaagtgaatactcc
cttgtcaccatcttacgagtaagaagaaccacaaaaaaagaccgatggtatctttggcag
gtgttcgaccagtcaggaggcagtcaggtatctgttgtggtcgatggtggcaagaaggcg
gtggagttctcttcccaaggccagctaaagaacaccctccgctacacgtttaagagccgt
gacctacatgccctctttgatcgccagtggcacaagctgagcatttctgtgcagagcaac
atagtctccatttacatgaactgcaagctaatagaaaggagattgactgacgaaagggac
ggcattgaccccagtgggcgcactctcatcactacacgagtggaggatggtcggcctgta
gatgtggaagtaagacagattctgctctactgtgacccttatatggctgaaatggaaaat
tgctgtgagctacaggagccatcgtgtgagaccaaggggacatttaatgggacttcccct
cccctggttacagcccagctcccccagatgctgtctcagccgcccaaacagtcaattgac
agatgtcactgtccagctgaaaagggggactcgggggaggtcgggcttcaaggaaaccca
ggacacaagggggaacttggatcagaagggcaaaagggaatcgatggggagaaggccgac
aaagattgtttcaagggtgaccagggctctcgtggtgaaaaaggagagaagggatctgcc
ggagtgccaggtcagccaggggagccaggcaaagagggcaaaaggggacgaagaggaaag
actggggagcctggacccaggggcctgcctggtccctcagccacctccgagggagcaagt
gtcaagggggagaagggtgagactgtagtcccggtgggaaagggggagaaaggagacact
ggtcagccaggtgctgagggggccagcgggacgaaaggagagaaaggggatgtcggccct
cctggtcctcctggtcctgtgatgacagctcatggattgagactctctggaactgacgaa
atgaaggaggggaccctagatggagagaagggagatcagggggagagaggagttcaagga
ccgcaaggctcgaagggaaacatggggccgccaggactgaagggagatctaggaccagag
gggaagcaaggcctgcctggtctcccaggactcctaggcgagccaggctcgccaggggag
ccaggggtgcctgggagagatggcctaaaaggagaaaagggggactctggtggagtgatg
ggactacagggacctccaggtccgaagggtgaacctggagagcctggaggtggatacatg
ggcgacgggttgtctctgcccagagggtctcgtggtcccaagggtgagaggggtgtccca
gggttgccaggagaccacggtgaaaaaggcgaacctggagcgggtatcatcggctcgcct
ggcccaatgggacccccaggaaagccaggacctgagggcctacgcggacccccgggtttc
tctggccctcctggagttcctggaagagagggctcccctggtagaccaggtcccccaggc
cctgctggacccccaggtgaaccaactgccctgccaattgttggagacatgggtgcaata
cttaagaacgcctgcagttcgtgccagacaagagtcccagggcttccagggcagaaggga
gagaagggctcccctggagcgcaaggtgtagaaggcctggtgggagaaaagggggatcca
ggtgtgagggggcctatgggtaaccctgggaaagaaggcccaaagggagtgaaaggagaa
cgaggcttcccaggccctacaggagataaaggtgatgaggggccttcaggagtaccggga
cttccaggcgtgaccggtcgtacaggggccccagggattttgggcagaccaggaccgatg
ggacaaacgggaggaaaaggagacagaggaaacgaaggacctccggggagaccagggctt
ccagggccgccgggtgttccctatgtggagggcaatgggatgagcagcctgtacaagctg
cagagcggtggagctattttaggaccacctggagctccgggtgctccgggtcccaaagga
gacgacggacattcaggggaaccaggggccatgggattacccgggcttgaaggtctacct
ggttccaagggtgatatcggtttgcctggtcctgccggaatatcaggtccttcagggaag
cccggcactcgtggagagccagggatcccaggagaaccgggtgagagggggccgcttgga
gagacaggattccctgggcccgagggaccccaaggtgttgctgggagagcgggaaaagat
ggaactcctggatacaagggagtgacgggtagaaccggggacagaggatccaaaggagaa
cgtggtgatccagggattcctggagaaagaggcgttcaaggcgagaggggtcgtgcagga
gattctggccctcttggaccgatcggaccaataggccgaaaaggcgatccgggccctccg
ggacagctggggagcgcaaacctcttgggtgatcctggcttcatggaggaactcaaaatg
ttcatcaggagtgaagtgttgagagtctttgaagagaagctctcgggcactgccatgcca
cagaagacacctgcaggcatcttagcttcacaaatccaaggtcctccaggacctccaggc
cagaacgggctacaaggccctccaggagagcctggacctcctggttctcaagggtacagg
ggtcagaagggagagagagggcagctcggtctgggattaccaggagatccaggagtcatg
gggccaccaggccatcctgggatccctgcgcagggtcctcctggctctccggggccccgc
ggacctcccgggacatgtgaccccagtgactgtctccttccttccctatga
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integrated database retrieval system
