Semicossyphus pulcher (California sheephead): 138589302
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Entry
138589302 CDS
T10596
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138589302
04518 Integrin signaling
138589302
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138589302
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138589302
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138589302
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
138589302
NCBI-ProteinID:
XP_069515625
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFGFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGHQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG
PKGPPGPMGPPGEQGARGEVGAKGDKGNSGPRGRDGEPGIPGNPGPPGPPGPAGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGPAGSLG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGTAGENGAPGPMGPRGLPGERGRSGAAGSAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGSEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPSGPQG
APGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGASGAAGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKPGEKGLVGRSGLRGLSGKDGETGASGPPGPAGPAGERGEQGQPG
PSGFQGLPGPSGAPGEAGKPGDQGVSGEGGAPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGSDGPKGAIGPAGAGGSQGPPGLQGMPGERGAGGIPGPKGDRGDNGQKGPEGASG
KDGSRGLTGPIGPPGPSGPNGAKGETGPGGPTGASGARGAPGDRGEGGPPGPAGFAGPPG
ADGQPGAKGELGESGQKGEGGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGTPGPNGNPGAAGPAGPSGKDGPKGARGDGGSPGRQGDAGLRGPAGTQGEKGEPG
GDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGGSGSAGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGSTGVKGERGNTGPGGAPGAPGAPGAPGPVG
PLGKQGDRGEGGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDSGSSGPAGPSGAKGPGGPAGPAGKDGSNGTPGPIGPPGPRGRSGESGPAG
PPGNAGPPGPPGPPGPGIDLSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSSLK
AMNNQIENLRSPDGSQKNPARTCRDLKLCHPTWKSGDYWVDPNIGSTADAIKVFCNMESG
ETCVYPSIANVPKKNWWTSKSKDRKHVWFGETMDGGFHFSYAEGGPVANTASVQLTFLRL
LSTEASQNLTYHCKNSVAYMDQATGNLKKAVLLQGSNEVEIRAEGNSRFTYSVSEDGCKK
HTGQWGKTVFQYKTQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggcggctgcatccaggac
ggccatcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagattatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacgattggtgctaagggccagaaaggtgaaccaggagagatcgcagatgtcgtagga
ccaaaaggaccaccaggaccgatggggcccccaggtgagcagggagcacgtggagaagtt
ggcgctaagggtgacaagggaaattctggacctcgaggaagagatggcgagcctggcatc
cctggaaaccccggaccccccggcccacctggaccggcagggcttggaggaaactttgct
gctcagatggctggaggttttgatgagaaggctggaggtgctcagatgggtgtgatgcaa
ggaccaatgggtcccatgggtcctcgtggtccccctggaccttctggagctcctgggcca
cagggtttccaaggtggccctggagaggctggagagcctggaccagctggatcgctggga
cctcgtggaccacctggaccttctggaaaaccaggaagtgatggagaggctggcaaacct
ggaaaagctggtgagcgtggacctgcagggcctcagggagctcgcggattccctggaact
cctggacttcccggaatcaaaggacacagaggtcatcccggtttggatggagctaaggga
gaaactggtgctgcaggagccaagggtgagtctggtaccgccggagagaacggagcccct
ggacccatgggcccacgtggtctgcctggtgagaggggacgttctggagctgctggatcc
gctggtgctcgtggaaatgatggtttgcccggtcctgctggtccacctgggcctgttggt
cctgctggagctcccggtttcccaggatctccaggagccaagggagaagctggtcctact
ggagcacgtggatctgaaggacaacagggaccccgtggcgaggctggaaccccaggatct
cctggacctgctggagcatccggtaaccccggtactgatggtatccctggagctaaagga
tctgctggagcttctggtattgctggtgctcctggattccccggcccccgtggcccacct
ggaccacagggagctacaggacctcttgggccaaagggacagtctggagaccccggtctg
cctggattcaaaggtgaagctggacccaagggagagcttggcccctctggtcctcaaggc
gcccccggccctgctggagaagaaggaaagagaggagccagaggagagcccggagctgct
ggaccactcggacctccaggagagagaggtgctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggtgcccccggtgaccgtggtgttcctggtgctgctggg
cctaaaggtgctactggagaccccggacgcacaggagagtctggcctccccggagccaga
ggtcttaccggtcgtcctggagatgctggtcctcagggaaaagttggagcctctggtgct
gccggtgaggacggtcgccccggcccacctggccctcagggagcccgtggacagccagga
gtgatgggattccccggaccaaagggagccaatggtgaggctggaaagccaggagagaag
ggtcttgttggtcgttctggtctgagaggtctgtctggaaaagatggtgagactggtgct
tctggacctcccggccctgctggacctgctggagagagaggagagcaaggacagcctgga
ccttctggcttccagggtctacctggaccatctggtgccccaggagaggctggaaaacct
ggagaccagggagtttctggagagggtggagctcctggtgctgttggaccaagaggtgag
cgtggtttccctggtgagaggggcggcgctggagcgcagggtcttcagggacctcgtgga
cttcctggaacacccggatctgatggacccaagggagctattggaccagctggtgctggt
ggatctcagggaccccccggcctgcagggtatgcctggagagagaggagccggtggcatc
ccaggacctaagggagacagaggtgacaacggacagaaaggacctgagggagcttctgga
aaagatggttctagaggtttgactggtcccattggtcctcctggcccatctggacccaac
ggcgccaagggtgagactggaccaggtggccctaccggtgcttctggtgctcgtggtgct
cctggtgaccgcggtgagggcggtcctcctggacctgctggttttgctggacctcctggt
gcagatggtcagcctggtgctaagggagagctcggtgagagcggacagaagggagaaggt
ggtgctcctggacctcagggaccatctggcgctcctggacctgtgggacctactggtgta
tctggacctaaaggagcgcgtggtgctcagggagctcctggtgctactggtttccctggt
gctgctggcagagttggaactcctggccctaatggtaaccctggtgctgccggccccgct
ggtccttctggtaaagacggaccaaagggtgctcgtggtgatggcggctccccaggaaga
cagggagacgctgggcttcgtggacctgctggcacacagggagagaagggagagcctgga
ggggatggaccccctggtgctgacgggccttcaggtcctcagggtcttgccggatctcgc
ggtattgttggtttgcctggtcagcgtggagagagaggcttccctggtctccctggacct
tcaggagaacctggtaaacaaggaggttctggatctgctggcgaccgcggacctcctgga
cctgtgggaccccctggacttactggacctgctggagagaccggaagagagggtaccccc
ggatcagatggacctcctggtagagacggatctactggagtcaagggagagcgaggtaac
accggccctggtggcgcccccggagctcctggtgcccctggcgcccccggacctgttgga
cctctcggaaagcagggagacagaggagagggtggtgctcaaggacccgcaggaccctcc
ggacccgctggcgctcgaggcatggctggaccccaaggaccccgtggagacaagggagag
gctggcgagactggagagaggggacagaagggtcaccgcggcttcaccggtctgcagggt
cttcccggacctcctggtcccgctggagactccggttcttccggacctgccggaccaagc
ggagctaagggaccaggtggacctgctggacctgccggcaaagacggatccaacggaacg
cctggccccatcggaccccccggacctcgtggacgttctggagagtctggccctgctggt
cctcctggtaacgccggaccccccggccctcctggtccccctggccctggcatcgacctg
tctgctttcgccggcctgggtcagactgagaagtcccccgatcctctcaggtacatgagg
gctgacgaggcctccagctccctgaggcagcacgacgtggaggttgactcctcactcaag
gccatgaacaaccagattgagaacctgcgcagccccgacggctcccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctacgtggaagagcggtgactactgggtt
gatcccaacattggcagcacagccgatgccatcaaggtcttctgtaacatggagagtgga
gagacctgcgtctacccgagcatcgccaatgtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacgtctggttcggagagaccatggatggaggattccacttcagc
tacgctgagggtggcccagttgccaacactgccagtgtccagctgaccttcttgaggctt
ctgtccactgaagcttcccaaaacctcacttaccactgcaagaacagcgttgcctacatg
gaccaggccacaggcaacctgaagaaggccgtgctgctgcagggctccaacgaggtggag
atccgcgcagagggcaacagccgcttcacatacagcgtgtccgaggatggctgcaagaaa
catacaggccagtggggcaagactgtcttccagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcctatggacatcggaggagccaatcaggagttcggagtggat
gtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
