Semicossyphus pulcher (California sheephead): 138589515
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Entry
138589515 CDS
T10596
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138589515 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spul03019
]
138589515 (pan2)
Enzymes [BR:
spul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
138589515 (pan2)
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138589515 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
138589515 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
138589515
NCBI-ProteinID:
XP_069515933
LinkDB
All DBs
Position
Unknown
AA seq
1211 aa
AA seq
DB search
MMNFDGLDPGMGEYPPSLHGTLDAGMEPSMDPHLNPNLLQGVELDPEGLAVTVPEPVHLM
EGMFSELHSAVSEVGIPVTATHFDLQEEMLWTGNHRGHVTSFFGPTMGRHSSFQAHASDD
IRHIQSLETGVLFLSKSNLKCHTRGGLVMFDYPMEEGSDMHSLLMTDNNTLLMGGLQNYV
VEVDLNTVQETQKFSVELPGVAIMRQTGRFFFCGHTSGKVTLRDLRSFKTEHEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNGLACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANVADIFHVNTVGQLLMSFDVSSSKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETEFALPCLVDTLPQLDWNHDLLPLSLIPMPLTSAEQLLSDWSTALA
TPSPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKIKDVELDYDNYNQVPESPI
GRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSGESEIGKL
FGCEVENSSLCRCGKETVRTSLTLLFTMHYPEQSSQDKTMKEYDFAEILKKSICLEQSTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKVQAEYAFNKAKQKEAMEPP
KPKEPPPPMPTEWCLDGEDCNMDGFTFDTRAEDLRHVWIPLTLKMSISKSQGLEISSWPE
GEELSAAEEAEGASLYDLVVTVPHVLDARTGGNLVAHIKVGETYHQRKEGVTHQQWYLFN
DFLIEPIDKTEAAQFDVSWKVPAILYYAKRNYHTKYDLRIKNPIDASVLLTEASLARKQR
KSHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVR
GQGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLID
TGVRFVGHGLQKDFRVINLLVLKDQVIDTVYLFHLPRKRMISLRFLAWYFLDLNIQGETH
DSIEDARTALQLYRKYLELSRGGGTDEVRKVLKGLYEKGRQLDWKVPESDAGDGQGSPKT
GAAVFPSVMGL
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgacggtctcgaccctgggatgggtgagtacccacccagccttcacggg
actctggacgcggggatggagccctccatggaccctcacctcaaccccaatctactgcag
ggcgttgagctggacccggaggggctggctgtaacagtccccgaacctgtgcatctcatg
gaggggatgttttctgagctgcacagtgcagtttcagaagttggcatcccagtcactgca
acacattttgatctccaggaggaaatgctgtggacgggaaaccacagaggtcatgtaacc
tcgttcttcggacccacaatgggccgccattcttctttccaagcacatgcatcagatgac
atccgacacattcagagtttggaaacaggcgtcctcttcctctccaagtctaaccttaaa
tgccacactcgtgggggccttgttatgtttgattacccgatggaggagggctctgacatg
catagtctcctcatgaccgataacaacaccttgctcatgggtggattacaaaactatgtg
gtagaagttgacttgaatactgttcaagaaactcagaagttcagtgttgagttacctgga
gtggcaataatgcgccaaaccggccgtttcttcttctgcgggcacacctctggcaaggta
acccttcgggacttgcgtagcttcaagacggagcacgagtttgatgcgttttctggcagc
ctctcagactttgacgttcatggaaaccttctggctgcgtgcgggttctcgagccgagga
ctgaatgggttagcatgcgaccgtttcctcatggtgtatgacctccgcatgatgcgagct
gtgacgccacttcaggtgcacgtggaccccctcttcttgcgcttcattcctacctacacg
tcacggctggccatcatctcacaaacaggtcaatgtcaattctgtgagcccactggtctc
gccaatgtggcagacatttttcacgtcaacaccgtaggccagctgctcatgagttttgac
gtatcgtccagcaagcaagccctggcctttggggactcaggtggatgtgtgcacctgtgg
tctgatgctccagaggtttcatttaacgactactctcgggagaccgagtttgctctgccg
tgccttgtggacacgctgcctcagctggactggaaccacgacctgctgcccctctcgctc
atccccatgccgctgaccagcgctgagcagctgctgtcggactggtccactgcactggct
acacccagccccagacgagctcctcctgtggacccagaaatcctgcgcacaatgaaaact
gtcgggttcattggttatgcagcaaatcctcgtacccgccctcgcaaccaggttccgtac
aaaataaaagacgtggagctcgattatgataattacaaccaggtccctgagtcaccgatc
gggcgagatgaagagccacacctctacatggtgcccaaaaagtacagaaaggtcacaatc
aagtactccaaacttggactggaggactttgacttcaaacactacaacagaacgttgttt
gctggtctggagcctcacatccccaacgcctactgtaactgcatgatccaggttttatat
ttcctggagccaatccgctgtctagtccagaatcatctgtgccagaaggagttttgtttg
gcctgtgagctcggcttcctcttccacatgttggatttgtcacgaggagatccatgccag
gccagtaacttcctccgagcatttcgaaccatccccgaggcctcagcgctcggcctgatc
ctcgctgactcagacgagcaaacggggaaggccagactcggtcgcttgatccagagctgg
aaccgcttcatcctcacgcagctccaccaggagacgcaggagcaggagggcccgcaggct
tacaggggagccagcagcagttccctgggttcctctggtgagtctgaaatcgggaaactg
tttggctgtgaagttgagaacagcagcttgtgtcgctgcggaaaggagacagtccgcacc
tctctcacgttgctcttcaccatgcactaccctgagcagagctctcaagataaaacaatg
aaggaatacgactttgctgagatcttgaagaagagcatctgtctggagcagagcacgcag
gcctggtgtgagaactgcgagaagtatcagcccacagtgcagacacgaaacattcgctgt
ctgcctgatgttctggtcatcaactgtgaggtgaacagcgctaaagaggccgaattctgg
aaggttcaggcggagtatgccttcaacaaggcgaagcagaaagaggcgatggaacctcca
aaacctaaagaaccccccccacccatgcccaccgagtggtgcttggatggggaggattgc
aacatggacggcttcacctttgacacccgggcggaggatctgcgtcacgtctggatccct
ctcactctcaagatgtccatcagcaaaagccagggcctggagatcagtagctggcctgaa
ggagaggagctaagtgctgctgaggaggcggagggtgcttctctctatgacttggtcgtc
acggtgcctcacgtcctggacgcacgtacaggaggaaacttggtcgcgcacattaaagtg
ggcgagacgtaccatcaaagaaaagagggtgtcactcaccagcagtggtacctcttcaat
gatttcctcattgagccaattgacaagactgaagctgctcagtttgacgtgagctggaaa
gtgccggccattctgtattacgccaagaggaactaccacaccaaatacgacctccgcatt
aaaaaccccatagatgccagtgtgctgctgaccgaggcctcgttggctcggaagcagagg
aagagtcacgccaccttcatccccctcatggtcagcgagatgccgcaggctggggacctg
gtggggctggatgctgagtttgttacactcaaccaggaagaggcagagctgcgcagtgac
ggcaccaagtcgaccatcaagcccagtcagatgtcggtggccaggatcacctgtgtgagg
ggtcagggccccaacgagggggtccccttcatcgatgactacatctctactcaggagcag
gtcgtcgactatctgacacagtactctggcatcaaaccaggagatctggatgcaaagatt
tcttcaaagcatttgaccacgttaaagtccacctacttgaagctgcgcttcctcatcgac
acgggagttcgctttgttggccacggcttacagaaggactttcgcgttatcaatttgctg
gttcttaaagatcaagtcatcgacacggtctacctgtttcatttaccgcgtaagaggatg
atttctctgaggtttctcgcctggtactttctagacctcaacatccagggggaaacccac
gacagcatagaggatgcacgcaccgctctgcagctgtacaggaagtacctggagctgagt
cgaggaggcgggacggacgaagtgagaaaggtcctgaagggactctacgaaaaaggccgc
cagctggactggaaagtccccgaatcggacgcaggagatggtcaaggtagcccaaaaaca
ggtgctgctgtgtttccctctgtgatggggctctga
DBGET
integrated database retrieval system
