Semicossyphus pulcher (California sheephead): 138591280
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Entry
138591280 CDS
T10596
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138591280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spul03021
]
138591280
03019 Messenger RNA biogenesis [BR:
spul03019
]
138591280
Transcription machinery [BR:
spul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138591280
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138591280
U7-dependent histone pre-mRNA processing factors
138591280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
138591280
NCBI-ProteinID:
XP_069517921
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MATKRKVEVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQSQVIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLKIFKNITLIHEVGMVMLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMETQSAIMDMDVFQTRLGVMLQDMFGEECVDFSDCKNISLTVDGKTVNICLETRSVS
YEDECTEDDSLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgcaaagtagaggtgattgtccccgcagaggaaagcgaccagctccta
atccgtccgctgggtgctggtcaggaggttgggaggtcatgcataatcctggagttcaaa
ggaagaaaaattatgctggactgtggcatccaccctggcttggagggaatggatgctctt
ccttacatagatttgatcgacccagcagagatagacctcctgcttatcagccattttcac
ttggatcactgtggagctctgccctggttcctccagaagaccagctttaaaggcaggacc
ttcatgacccacgccactaaggccatctaccgctggctgctgtcagactacgtcaaagtc
agcaacatctctgcagatgacatgctgtacactgagaccgacctggaggagagcatggac
aagatcgagaccatcaacttccacgaggtcaaggaggtggctggaatcaagttctggtgc
taccacgctggtcatgtgctgggagctgccatgttcatgatcgaaatagctggagtcaag
ctgctgtacaccggagacttctctcgccaagaagacaggcacctgatggcagctgagatc
cccagtgtcaaacctgacatcctaatcatagagtcgacctatggcacccacatccatgag
aagagggaggagagagaagcccggttctgtaacaccgtccatgacatcgtcaacagagaa
ggccgctgtttgatccctgtgttcgctttgggacgggcccaggaactgctgctcattctg
gatgagtactggcagaaccacccagagctccatgacatccccatctactacgcctcatcc
ctggctaagaagtgcatggccgtgtaccagacctacgtcaacgcaatgaacgacaagatc
cgcaaagccatcaacatcaacaacccttttgtcttcaagcacatcagcaacctcaagagc
atggatcactttgacgacatcggtcccagcgtggtgatggcgtctccgggtatgatgcag
agcggactctccagggagctctttgagagctggtgcaccgataagaggaatggagtcatc
atcgctggatactgtgtggagggcacactagccaagcacatcatgtctgagccggaggag
atcaccaccatgtcaggacagaagctgcagctgaagatgtctgtggactacatctccttc
tccgcccacactgactaccagcagaccagcgagttcatcagggcactcaaacctccacat
gtgatcctggtccacggggaacagaatgagatggcccgtctgaaggcggcgctgatcagg
gagtacgaggataacgaccaggttcacatagaagtccacaaccctcgaaacactgaggct
gtcaccctcaacttcagaggagagaaactggctaaggtgatgggctctctggctgataag
aagtgtgctcagggccagagagtgtcaggcatactggtgaagaagaacttcaactaccac
atcctcaatccctctgacctttccacatacacagagctggcaatgagcacagtgaaacag
tctcaggtcatccccttcactggaccttactctctgctcgtctgccacctgaggaacctc
acaggtgacgtggaagagctggatggaaccgagaagaacaccttgaagatctttaaaaac
atcacgctgattcacgaggtcggcatggtgatgctggagtggatagcgaaccctctcaat
gacatgtatgctgatgctgtcaccactgtagtgctggaggtccagtcgaacccaaaggct
cagaaagttatggagacccagagtgccatcatggacatggatgtcttccaaaccagatta
ggagtcatgttacaggacatgtttggagaggagtgcgtggatttcagtgactgtaaaaac
atctctttgacagtagacgggaagacagttaatatctgcttggaaacaaggtctgtgagc
tatgaggacgagtgcacagaggacgactctctcagagagatggtggagctggcggtgcag
cggctctatgatgcccttaacccggtcatctga
DBGET
integrated database retrieval system
