Semicossyphus pulcher (California sheephead): 138592505
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Entry
138592505 CDS
T10596
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spul04147
]
138592505 (col18a1a)
00535 Proteoglycans [BR:
spul00535
]
138592505 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138592505 (col18a1a)
Exosome [BR:
spul04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138592505 (col18a1a)
Proteoglycans [BR:
spul00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
138592505 (col18a1a)
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138592505 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
138592505
NCBI-ProteinID:
XP_069519430
LinkDB
All DBs
Position
Unknown
AA seq
1372 aa
AA seq
DB search
MKMRCSSWLERLLCCVLVLVSPNAAQWPEENGVSLLQLIGDPPPNEITQVFGPDNSPGYV
FGPDANTGQLARAHLPSPFYRDFALIFHLKPTSDRGGVIFSVTDSSQQIMYVGVKLSPVQ
GGNQNVILYYTEPDSQQSYEAARFLVPSMRDTWTRFAIAVRDEKVMFYLNCDTDPQVMRI
ERSPDEMELEAGAGVFVGQAGGADTDKFLGVIGELRVVGDPRAAERHCEEDEDDSDMASG
EGSGLPENRPPKPAVEKHRWTTTPPSSRPIQQPPVTRKEEVSVSRETASGSQHFSGYVES
RPGLPGSPGPGGARGEKGDRGERGEKGDRGPIGSKGESGSGSSSRSGARGEKGEPGEKGV
KGSAGFGYQGTKGEPGPVGPPGPPGPPGAATEFSVGGDGTVASRVPGPRGPAGPPGAAGP
QGPPGTDGEPGDPGEDGKTGSEGPPGFPGTPGDAGPKGEKGDRGEGQPGPRGSPGLPGPP
GPGLRSTFVDMEGSGFPDLESVRGLPGLPGPPGPPGPPGPSTAGAASGSGAFGPPGKDGS
PGQQGLPGLPGTDGSPGLPGGKGEKGDSGELGLPGAVGAKGAPGDNGLPGTAGEPGLAGL
PGPIGPVGPAGPPGPPGPSYRVGFDDMEGSGGGFSNGLPGVRGPEGRQGSPGLPGLPGKP
GFPGITGQKGTEGLVGRDGQPGLDGFPGPQGPKGDRGDKGERGDAGRDGSGLPGPPGPPG
PPGEVVYQISGNPDGSLGSVGPQGGAGLPGQAGFPGPIGPKGDRGDTGLPGYGVKGEKGE
PGLVIGPDGNLLSLEGLSGFKGDRGPAGPVGPPGQYGPAGLKGEIGMPGRPGRPGVNGYK
GEKGEPSTGSGFGYPGVPGPPGPPGPPGSPGPTLDRFNRYDDNSRNYYETKGEKGERGDR
GHPGIPGTASNIDIYAFKNELKGERGDSGLKGEKGEPAGGYYDPRFGVQGQPGTPGNPGL
PGPKGDSIIGPAGPQGPPGTPGIGYDGRQGAPGPPGPPGPPGSSSLPGAYRPNHSASVPG
PPGPPGAPGSPGLSSGVTVLRSYDTMIATARRQTEGSLIYIIDKADLYLRVRDGLRQVML
GEYSPFFRDLENEVAEVQPPPVIQYPKSQDQSHSNGAGHYSHGGSSIRPIEPPPRQPVDP
RYPPQYDPRFPDPRHTGETDGRLGNKEIENRHPVTPQRRPSPPLPQPGGNVDTSSSGLHL
IALNAPQSGNMRGIRGADFLCFQQARAIGLKGTFRAFLSSKLQDLYTIVRRSDRDGFPIV
NLKDQVLFSSWESIFRHDASKMKENVPIYSFDGRDILRDSAWPEKMVWHGSSNKGHRQTD
NYCETWRAGEHAVSGLASSLQSGHLLQQTSSGCSGSYIVLCIENAFTSPSKK
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaggtgttcctcatggctggagcgccttctctgctgcgtccttgttcttgtc
agcccgaatgcagcgcaatggccagaagagaacggagtctccctgctacagctgattgga
gatcctcctccaaacgagatcacacaagtcttcggtcccgacaacagccctggctacgtc
tttggtcccgatgccaacacgggtcagctggctcgcgcccacctgcccagcccgttctac
cgagatttcgccctcatcttccacctgaaacccacctctgacaggggcggcgtcatcttc
tccgtcacagattcctcacaacagatcatgtatgtgggtgttaaactgtcacccgtgcaa
ggcggcaaccaaaacgtcatcctgtactacacagagcccgactcgcagcagtcgtatgag
gcggccaggttccttgttccctccatgagggatacctggactcgttttgccatcgctgta
agggatgaaaaagtgatgttctacctcaactgtgacacagaccctcaggtgatgcgcatt
gagaggtccccggacgagatggagctggaggcgggtgcaggagtctttgttgggcaggct
ggaggagctgatacggacaagtttctgggggtgatcggtgagctcagggtggtgggagac
ccccgtgctgctgagaggcactgtgaggaggatgaagatgactctgatatggcttcaggt
gaaggaagcggcttgccagaaaacagacccccaaaaccagctgtggagaaacatagatgg
acgactactcctccatcttctcggcccattcagcagccgccagtcaccaggaaggaggag
gtgtcggtctcgagagaaactgcaagcggctcccagcacttttcaggttatgtcgagtcc
aggcccggacttcctgggtcaccagggccaggcggggctagaggagaaaagggcgaccga
ggggagagaggagagaaaggagacaggggtccaattgggtcgaagggagaatctggctcc
ggctccagctcacgaagcggagcccgtggagagaagggcgaaccaggggagaagggagtg
aagggctctgcaggctttggataccaaggaacgaagggagagcctggccctgttgggccc
cccggtccccccggcccaccaggggccgccaccgagttttcagtcggcggtgacggcaca
gttgcttccagagtccccggaccccgaggaccggctggaccacctggtgctgcgggcccc
cagggaccaccaggaactgatggagagccaggtgatcctggtgaggacggaaaaactggt
tctgaaggacctccaggcttcccagggaccccaggtgatgctggacctaaaggagagaag
ggagaccgtggagagggtcaacctggccccagggggtctccaggtcttccaggaccccca
ggaccaggactcagatctacatttgttgacatggaaggttcaggattccctgatctggaa
tcagtccggggacttcctggcctaccaggtcctcccggtccccccggccctcctggtccc
tcgacagcaggcgcagcatcaggttctggggcgtttggaccaccaggaaaagacgggtcg
ccaggtcaacaaggcttacctggtttgccaggtactgacggctccccaggacttcctggt
ggcaagggagaaaagggtgattcaggcgagctgggtcttccaggagcagttggagcaaag
ggagctccaggagacaatggtttaccaggaactgcaggagaacctggactggctggtctg
cctggacccataggacctgttgggccagctgggcctcccgggcctcctggaccaagttat
cgtgttggatttgacgacatggagggctcaggtggaggtttctccaatggacttccaggc
gttagaggaccagaaggacgacaggggtctcctggcttgcctggacttcctggaaaaccc
gggttccctggtataacaggtcagaagggcactgaaggtcttgttggacgagatgggcaa
cccgggttggatggcttccccggacctcagggaccaaagggtgacagaggtgacaaagga
gagaggggtgacgcgggtcgagatggaagcggactcccaggtccacccggcccacctgga
ccaccaggagaagtcgtttaccagatatctggcaatcctgatggcagccttggaagtgtt
gggcctcagggaggagctggtttacctggtcaagctggattccctggtcctattggacca
aagggtgacagaggagacaccgggcttccaggctatggagtgaagggggagaaaggtgag
ccaggcctggtaatcggacctgatggaaaccttctgtccctggaggggctgtcaggtttt
aagggagacagaggacctgccggacccgttggaccacctggtcagtatggacctgctgga
cttaagggtgaaatcggaatgcctggaagacctggtcgccctggtgtaaatggatacaag
ggtgagaaaggagagccaagcactggttccggcttcggctacccaggagtccctgggcca
cctggaccacctggaccccccggatcccctgggccaaccctagatcgcttcaatcgctat
gacgacaactcaaggaattactacgagactaaaggagaaaaaggagagcgtggtgaccga
ggacatccaggaatcccaggaacagcttctaatattgatatttacgcattcaagaatgaa
ctgaagggagagcgtggagactcgggtttgaagggagaaaagggggagccagctggtgga
tattatgacccacgttttggagtgcaaggccagccagggacgcctggaaacccaggcctt
ccggggccaaagggagactccattattggccctgccggacctcagggaccaccaggcaca
ccagggattggttatgatggccgtcaaggtgctccaggaccacctggacctccaggaccc
ccagggtcctcctcacttcctggagcatacagacccaatcactctgcgagtgttcctgga
cctcctggtcctcctggtgcacctggaagtcctggtctctcctctggggtcaccgttctg
aggtcatatgacacaatgattgcgactgccaggcgtcagacagagggcagcctcatctac
atcatagacaaagcagacctgtatctgagagtacgcgacggcctgagacaagtcatgctg
ggagagtacagtcccttcttcagagacttggagaacgaggtggcagaagtccagcctcca
cctgtgatccagtaccccaagtcccaggaccagtcccacagcaacggagccggccattac
tcccacggcggttcttccatacgccccattgagcctccaccacgccaacctgtggacccc
agataccccccacagtatgatcccagattcccagacccgagacacacaggtgagacagat
ggaagattaggcaacaaagagattgagaacagacaccctgtgacaccgcagagacgtccc
agccctcctctcccgcagcctggcggcaacgtggacacatcatcatcaggactacacctc
atcgccctaaacgcccctcagagtgggaacatgcgaggaatccgcggggcagacttcctg
tgcttccagcaggcccgcgctataggcctgaagggaaccttcagagctttcctgtcctcc
aagcttcaagacctctacaccatcgtccgcaggtcggacagggacggcttccccatcgtc
aacctcaaggaccaagtgttgttcagcagctgggagtctatcttcagacacgatgcgagc
aaaatgaaggagaatgtaccgatctactccttcgatggtagagacatcctcagggacagt
gcatggccagagaaaatggtctggcacggatcaagcaacaaaggccaccgtcaaacagac
aactactgtgaaacatggcgggcgggcgaacatgccgtgtctggtctggcatcttcgcta
cagagcggacacctcctgcagcagacctccagcggctgctccggctcctacatcgtcctc
tgcatcgagaacgccttcacatcaccctccaaaaaataa
DBGET
integrated database retrieval system
