Semicossyphus pulcher (California sheephead): 138594226
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Entry
138594226 CDS
T10596
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spul03019
]
138594226 (htt)
04131 Membrane trafficking [BR:
spul04131
]
138594226 (htt)
03029 Mitochondrial biogenesis [BR:
spul03029
]
138594226 (htt)
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138594226 (htt)
Membrane trafficking [BR:
spul04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
138594226 (htt)
Mitochondrial biogenesis [BR:
spul03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
138594226 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
HEAT
Motif
Other DBs
NCBI-GeneID:
138594226
NCBI-ProteinID:
XP_069521344
LinkDB
All DBs
Position
Unknown
AA seq
2906 aa
AA seq
DB search
MPLLQQQVNTTSLKGSFGVMRKEADVQPTPEQLLQVYELTLHYTQHWDHNVVTASLELLQ
QMFRTPPPELLHMLITAGSIPHATVFRQDTESRARSGSILELIGKILSGEEDGLEDDAER
TEVTTGAFTASVGADGSSVAQVDIITEQPRSQHTLQPGDSVDLGSSSEQGGGTSAPDTPE
SPNDNEEEMLSRSSSGGANITPETADYTTPENATPEGGPLGSSGTLLGTNDRSLPPSDSS
QTTTEGPDSAVTPSDVAELVLDGSESQYSGMQIGTLQDEEDEGVAPSSQEEPSEPFLQSA
LALSKPHLFEGRGHNRQGSDSSVDRFIPKDEPAEPEPDNKPSRIKGPIGHYTDQEVEPLV
HCVRLLAASFLLTGQKNGLTPDKEVRVSVKALAVSCVGAAAALHPEAFFNSLYLEPLDGI
PVGEQQYVSDILGLIDHGDPQIRGATAILSAAIIQAALTKTRFNIDTWLASVQSATGNPL
SLVDLVPLLQKTLKDESSVTCKMACSAVRHCIMTVCSSTLSELGLQLVIDLLALRDSSYW
LVRTELLETLAEMDFRLLNFLERKTEALHKGDHHYTGRLRLQERVLNDVVIRLLGDDDPR
VRHVAASSVSRLVPRLFYDCDQGQVDPVVAIARDQSSVYLQLLMHETQPPSQLTVSTITR
TYRGFNLSNTVADVTLENNLSRVVTAVSHAFTSSTSRALTFGCCEALCLLTLNFPVCTWS
IGWHCGYISSSSSFSSRSSLNRSRGRALSAPSSLSTSSAADTERRTLTVGMANMVLSLLS
SAWFPLDLSAHQDALVLSGNLLSAVAPKCMRNPWAGEEEGSSGSTNPSAGPNKMEEPWVG
LAERSLVAMVEQLFSHLLKILNICAHVLDDTPPGPAVKATLPSLSNTPSLSPIRRKGKEK
DAAEPSVAPMSPKKGNEVNTAGRLADNTGSTAVNKSTTLGNFYHLPPYLKLYDVLKATHA
NYKVTLDLHSSQEKFGGFLRSTLDVLSQLLELATLHDISKCVEEILGYLKSCFSREPTMA
TVCVQQLLKTLFGTNLASQYEGVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQ
ALADASLRNMVQAEQEQDTSGWFDVMQKASNQLRSNIANATRHRGDKNAIHNHIRLFEPL
VIKALKQYTTSTSVNLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFR
DSEAIIPNIFFFLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHD
LFVLRGSNKADAGKELDTQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSR
QIADVILPMIAKQQMHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTTPASMASVAT
VQLWVSGILAVLRVLVSQSTEDIVLSRIQELSLSPHLLSCHTIRRLHHQSPTPSEPPSSD
MLGNQEPNGEAQKSPPEETFARFLLQLVGVLLDDISSRQVKVDITEQQHTFYCQQLGTLL
MCLIHVFKSGMFRRITAAASRLLKGESGGGQTSTDANLFYPLEGLNSMVQCLITTHPSLV
LLWCQVLLIINYTNYSWWAEVHQTPRRHSLSCTKLLSPHSSGEGEEDKPETRLSMVNREI
VRRGALILFCDYVCQNLHDSEHLTWLIVNHVRDLISLSHEPPVQDFISAVHRNSAASGLF
IQAIQSRCDNLTTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLAC
RRVEMLLAETLQNSIAQLPVEELDRIQEYLQTSGLAQRHQRFYSLLDRFRATVADTRSPT
PPVTSHPLDGDPPPAPEQVIADKEWYVALVKSQCCLRGDVSLLETTELLTKLPPADLLSI
MSCKEFNLSLLCPCLSMGLQRLARGQGSLLFETTLQSTLERLAAITGSLPVPHQSFLPPS
QQQPYWEQLADVYGEPGFYPKVLSLCRALSQYLLSVSQLPSSLHLPSEKEHLITTFTCTA
TEVVVWRLLQDRLPLSVDLQWALSCLCLALQQPCVWNKLSTPEYSSHTCSLIYCLRLIIV
AVAVSPGDQLLHPEKKKTKAERDDEEDQVDSAHADHILEWQACEIMAELVEGLQSVLALG
HHRNSAFPAFLTPTLRNIVISLSRLPLVNSYTRVPPLVWKLGWSPQPGGEFGTTLPEIPV
DFLQEKDVFREFLYRINTLGWSSRTQFEETWATLLGVLVTQPITMDQEEETQQEEDLERT
QLNVLAVQAITSLVLSAMTLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVER
EIQALVSKRDNVHTHHPYHAWDPVPSLSSASAAGTLISHEKLLLQINTEREMGNMDYKLG
QVSIHSVWLGNNITPLREEEWGEDEEDETDTPAPTSPPVSPINSRKHRAGVDIHSCSQFL
LELYSQWLIPGSPSNRRTPTILISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPE
DEILNQYLVPAICKAAAVLGMDKAIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDL
LDDTAKQLIPTISDYLLSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGSEFMAG
VIQLCGVIVSASEDSTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHR
AMAALGLMLTCMYTAVLASGSDVTGVRGQVDSGSAVAEALGVTTGHVGFSSGKEKASPAS
RPTHSDPQAPDSESIIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNK
VIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSL
SCFFVSASTSQWISALLPQVISRMGSSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVF
ETVASPGSPYYQLLGCLQSIHQDTSL
NT seq
8721 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctgcagcagcaagtgaacaccaccagtctcaaaggaagctttggagtcatg
aggaaggaggctgatgtacagccaacacctgaacaacttctccaggtgtacgagttgacc
ctacactacacacagcactgggatcacaacgtggtcacagcatctctggagctcctgcag
cagatgttcaggactcccccaccagagcttctgcacatgctcatcaccgccggcagcatt
ccacatgccactgtttttcgccaggacacagagagccgtgcgcgatctggcagcatcctt
gagctaattggtaaaatactttctggggaggaggatggtttagaagatgatgcagagaga
acagaggttactactggtgccttcacagcatcagttggtgcagacggctcctctgtggca
caggtggacatcatcactgagcagccacgctcccaacataccttgcaaccgggagactct
gtggaccttggttcctcctcagagcagggaggcgggacctctgcaccagatactcctgag
tcacccaatgacaacgaggaggaaatgctgagtcggagctcaagtgggggggcaaacatc
actccagagaccgctgactataccactccagagaatgccacccctgagggggggccccta
ggatcatctgggactttactgggtactaatgaccgctcgcttccacccagtgactcctcc
cagaccaccacagagggaccagattcagctgtcaccccttcggacgtagcagaactggtg
ctggatggcagtgaaagccagtactctgggatgcagattggaacactacaggatgaagaa
gatgaaggagtagcaccttcctcccaagaagaaccctcagaaccattcctgcagtcagca
ctggctctgagcaagcctcatcttttcgaaggccgaggccacaacaggcagggttcagac
agcagtgtggaccgcttcataccaaaggatgaacctgctgaacctgaacctgacaacaag
ccatcgcggataaagggtccaattggacattatacagaccaggaggtggaaccactggtg
cactgtgtacggctacttgctgcttccttcttgctgacaggacaaaagaatggtctcacc
cctgacaaggaggtgcgagtgagtgtaaaggctctggcggtcagctgtgttggtgcagca
gctgcgctgcatccagaagccttcttcaattccctttacctggagccgctggacggcatt
ccagtgggagagcagcagtatgtcagtgacattctgggcctcattgaccatggggacccc
cagattagaggggccacggccatcctctctgcagccattattcaggcagcactcaccaaa
acacgtttcaacatagacacctggctggccagtgtgcaaagtgcaacaggtaaccctctg
tccctggtggacttggtgcctttgctccagaaaactctgaaagatgaatcgtctgtcacc
tgcaagatggcttgttctgcagtgaggcactgcatcatgactgtgtgcagcagtaccctg
agtgagcttggcctgcagttggtgatagacctgcttgctcttagggactcatcgtattgg
cttgttcgtactgagctcttggagaccctggctgagatggacttccggttactcaatttc
ttggagaggaaaacggaggctttacacaaaggggatcatcactacactgggcggctgcgg
ctgcaggaacgagtcctgaatgacgtggtgatccgcttgttgggagatgatgaccctaga
gtccgacatgtggcagcctcttctgtcagcaggctggttcccaggttgttctatgactgt
gaccagggtcaagtggatccagtggtggctattgcccgggaccagagttcagtctacctg
cagctgctgatgcacgagacacaacccccctcccagttgacagttagcacaatcacaagg
acatacagaggcttcaacttgtccaacactgtggctgatgtcacactggagaacaattta
tccagagttgttactgccgtttcccatgctttcacctcctctacctccagagccctgact
tttggctgctgtgaggcattatgcctcctgactttaaattttccagtgtgcacttggagc
ataggctggcactgcggctatattagctccagtagcagtttttcttctcgctctagtctc
aaccgcagcaggggcagagctctcagtgccccttcctctttgagcacctcctctgctgca
gacactgagcggaggactctgacagtgggaatggccaacatggtcctgtccttactctca
tctgcctggtttccactggatctctctgcacaccaggacgcacttgtgctttctggcaat
ttgctttctgctgtggctcctaaatgcatgcgcaacccctgggctggagaagaagaaggc
agcagtggtagcacgaaccccagtgcaggcccaaataaaatggaggaaccctgggtgggg
ctggctgagcgctccttggtggccatggtggagcagctcttctcccacctactgaagatc
ctcaacatctgtgcccatgtgctggatgacacaccacctggaccagctgtgaaggccacc
ctcccctccctgagcaacaccccctccctcagtcccattcggagaaaaggcaaggagaag
gatgcagctgagcctagtgttgctccgatgagcccaaagaaaggcaatgaggtcaacaca
gcaggcaggttagcagacaacacagggtcaactgccgtaaacaaatcaaccacccttggc
aacttctaccatttgccaccctacctcaagctgtatgatgtcctcaaagctactcatgcc
aactacaaggtgacactggacctccacagtagccaagagaagtttggaggtttcctgcgt
tccactctagatgttctgtcccagctcctggagctggccacactacatgacatcagcaag
tgtgttgaggaaatcttgggctaccttaagtcctgtttctccagagaaccaacaatggct
acggtttgtgtacaacagctgttgaagactctgtttggcaccaatctggcttcccaatac
gagggcgtcctgagtggaccgagccgatcccagggaaaggctctccgccttggctcgtcc
agcctgcgacccggcctctaccattactgcttcatggcgccgtacactcacttcactcag
gctcttgctgatgcaagtctgcgcaacatggtgcaggccgaacaggagcaggacacctct
ggatggtttgatgtcatgcaaaaagcttcaaaccagctgaggtccaacattgcaaatgca
acacgccacagaggagacaagaatgctatccacaaccacattcgtctgtttgagccgctg
gtgatcaaagctttaaagcagtacactaccagcacctccgtgaacctgcagagacaagtt
ctggacctgcttgcccaacttgtgcagctcagagtcaactactgcctgctggactcggat
caggtgttcatcggctttgtcctgaagcagtttgagtacattgaagtgggccagttcaga
gattcggaggccatcattcccaacatctttttcttcctggtgctgctgtcttatgagcgt
taccattccaagcagataatcagcatccctaagatcatccagctgtgtgacggcatcatg
gcaagtggaaggaaagcagtcactcacgccatcccagccttgcagccaatagtgcacgac
ctgtttgttttaaggggctcgaacaaagcagatgcaggcaaagagctagatacacagaaa
gaagtggtggtctctatgctgctcagacttgtgcaataccatcaggtgttggagatgttt
atccttgtgctgcagcagtgtcacaaagagaatgaggacaagtggaagcgattgtctagg
cagattgctgatgttatacttcccatgattgctaagcagcagatgcacctggactccccg
gaggcgttgggagtgttgaacactctgtttgagactgtggcaccctcctctctcagacct
gtagacatgctgctcaagagtatgttcaccaccccggccagcatggcttcagttgctaca
gtccaactgtgggtgtctggtatcctggctgtgctcagagtactcgtctcccagtccact
gaggacattgtcctgtcccggatccaagaactctccctctctccgcacctcctctcatgc
cacacaattcgtcgtctgcatcatcagagccccaccccaagtgaaccgccctctagtgac
atgcttggtaaccaggagcctaatggtgaggcacagaaatccccacctgaggaaactttt
gccaggttcctgctccagctggtaggagtgttgctggatgacatttcctccagacaggtg
aaagtggacataacagagcagcaacacaccttctactgccagcagctgggcacactgctc
atgtgtctcatacatgtattcaaaagtggaatgtttcgcaggatcacagctgcagctagt
cgtctccttaagggtgagagcggaggtggacagactagcactgatgctaacctgttttac
cccttggagggtctcaacagtatggtgcagtgcttgatcacgacccacccctctctggtg
ctgctgtggtgccaggtcctcctcatcatcaactacactaactactcctggtgggcggag
gtgcaccagacacctaggagacacagcctgtcatgtacaaagctgctgagccctcactcc
tctggggaaggagaagaggacaagcctgagactcggttatccatggtgaacagagagatt
gtacgcaggggagccctcatcctcttctgtgactatgtgtgtcagaacctccatgactca
gaacatctgacctggctgattgtcaaccatgtgcgtgacctcatcagcctttcccatgag
cctccagtgcaggatttcatcagcgctgtgcaccgcaactcagctgccagtggcctcttc
attcaggcaatccagtcacgctgtgacaacctcactactcctaccatgttaaaaaagact
ctgcagtgtttggaaggcatccacctgagtcagtctggctccctgctgatgctgtatgtg
gacaagctgctcagtacacccttcagggttctggctcgcatggtggacacactggcatgt
cgcagggtagagatgctgctggctgagaccttacagaacagtatagctcagctgcctgtg
gaggaactggacaggatccaggaatacctccagaccagtggcctggctcagaggcatcag
aggttctactccctgctggacaggtttagagccactgttgccgacaccagaagccccaca
cctcctgtaacatcacaccccctagatggggatccaccacctgcccctgaacaggtcatt
gcagataaggagtggtacgtggctctggtgaagtctcagtgttgtctgcgtggagatgtt
tccctgttggagactacagaactcctcaccaaactacctcctgctgacctcttaagcatc
atgagctgcaaggagttcaatctaagcctgctgtgtccatgcctgagtatggggttacag
cggttagcccgggggcagggatcgctcttgtttgagaccaccttgcagtcaaccctagag
cgtcttgcggccatcactggatcacttcctgtcccacaccagtccttcctgccaccctcc
cagcaacagccctactgggagcaactggctgatgtgtatggtgagccaggattctacccg
aaggttttgtcactctgcagagctctgtcccagtacctgctgagtgtaagccagctacct
tcctcactacacctcccctctgaaaaggagcacctcattaccactttcacctgcactgcc
actgaggtggttgtgtggcgtcttctccaggaccgcctgcccctgagtgtggacctgcag
tgggctctgtcctgtctttgtctggccctgcagcagccctgcgtctggaacaagctctcc
accccggagtacagcagtcacacctgctccctcatctactgcctacgcctcataattgtt
gcagtggctgtgagtcctggcgaccagctgttgcacccagagaagaaaaagacgaaggca
gagagggatgatgaagaagatcaagttgactcagcacacgctgaccacattttagagtgg
caagcatgtgagatcatggcagagctggttgaaggcctgcagagcgtccttgctctgggt
caccatagaaacagtgcattccctgctttccttacaccaaccttgcgcaacattgtcatc
agtctgtcccgccttcctctggtcaacagctacacccgagtacctccactggtctggaaa
ctgggctggtcccctcaaccaggaggggaatttggcacaacgctgcctgagatccctgtg
gacttcctgcaggaaaaggatgtcttcagagagttcctctaccgcatcaacacactgggc
tggagcagcagaactcagtttgaggagacctgggccactcttctgggggtgctggtcacc
caacccatcacgatggaccaggaagaggagacgcagcaggaggaggacttggagcgtacc
cagttgaatgtgttggcagtgcaggccatcaccagcctggtgctgagtgccatgaccctg
cctactgctggtaaccctgcagtcagctgtctggaacagcaaccccgcaacaagagcctc
aaagccctggagacacggtttggaaggaaacttgcagtgatcaggggtgaggtggagaga
gagattcaggctcttgtgtcgaagagagacaatgtccatacgcaccacccataccacgcc
tgggaccctgtaccatcactttcatcagcatcagctgctggcacgctgatcagccatgag
aagctgctgcttcagattaacacagagagggagatgggaaacatggattacaaactagga
caggtctccatccactcagtgtggcttggtaataacatcaccccactgagagaggaagaa
tggggtgaggacgaagaagatgaaacagacactccggcccccacctccccacctgtttct
cccatcaactctaggaagcatcgtgcaggtgtggacattcattcatgttcacagtttctc
ctggagctctacagccagtggctgatcccaggctccccaagtaacaggaggaccccaaca
atacttatcagtgaagtggtccgatcgctgctggcagtgtcagacctgttcacagagagg
aatcagtttgacatgatgttctccaccctgatggaactgcagaagcttcaccctccagaa
gatgagatccttaatcaatacctggtgcctgccatctgcaaggctgctgctgtactggga
atggataaagcaatagcagagcccgtgtgccgactgctggaaacaaccctgcgtagcacc
cacctgcccagccgtatgggggctctgcatggagtgctatatgtgttggaatgtgacctg
ctggatgacactgccaaacagctcatcccaactatctctgattatctgctgtcaaacctc
agggctattgctcactgtgtgaacctgcataaccaacagcatgtgttggtgatgtgcgca
gtggccttctacatgatggagaactaccctcttgatgtcggatctgagtttatggctgga
gttatacagttgtgtggtgtgatagtgtcggccagcgaggactccactccttccgtcatc
tatcactgtgtgttgcgtggtctggagcgccttttgctgtcagagcagctgtcacgtgtg
gacggtgaagcgctggttaaactaagtgtggaccgagtcaacatgccgtcgccacacaga
gccatggctgccctgggcctcatgctcacctgcatgtacactgcggtgcttgcgtcgggt
tcagacgtgacaggggttagaggtcaggttgactctggttctgccgtagcagaggcgctg
ggcgtcacaacgggtcatgttggtttctcctcaggcaaggagaaagccagccctgccagt
cgccccacccactctgaccctcaggcccctgacagtgagtccatcattgttgccatggag
agggtgtctgtgctctttgacaggatccggaaaggtttacccagtgaggctcgggtggtg
tcccggattttgccccagttcttggacgatttcttcccgccacaggatgtcatgaataag
gtcatcggagagttcttatcgaatcagcaaccttatccacaattcatggccactgtcgtc
tacaaggttttccagacactccatgccacaggccagtcttctatggtgcgggactgggtg
ctgctgtccttgtccaacttcactcagaggacaccagtggccatggcaatgtggagcctc
tcctgtttctttgtctcggcttccacctcccagtggatctcagctttactgccacaagtg
atcagcagaatgggctccagcgaggtggtggatgtcaacctgttctgcctggttgccatg
gatttctatcggcaccagatcgatgaggagctggaccgcagggctttccagtctgtcttt
gagactgtggcttcaccaggcagcccttattaccagctgctgggctgcctgcagtcaatc
catcaagacacatcgctctga
DBGET
integrated database retrieval system
