Semicossyphus pulcher (California sheephead): 138594447
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Entry
138594447 CDS
T10596
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03030
DNA replication
spul03420
Nucleotide excision repair
spul03430
Mismatch repair
spul03440
Homologous recombination
spul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138594447
03420 Nucleotide excision repair
138594447
03430 Mismatch repair
138594447
03440 Homologous recombination
138594447
03460 Fanconi anemia pathway
138594447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spul03000
]
138594447
03032 DNA replication proteins [BR:
spul03032
]
138594447
03400 DNA repair and recombination proteins [BR:
spul03400
]
138594447
Transcription factors [BR:
spul03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
138594447
DNA replication proteins [BR:
spul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
138594447
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
138594447
MMR (mismatch excision repair)
138594447
DSBR (double strand breaks repair)
HR (homologous recombination)
138594447
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
SOG2
Motif
Other DBs
NCBI-GeneID:
138594447
NCBI-ProteinID:
XP_069521638
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MSVNLTPGALKAVIRGTEVKHLVLQLLRIRQVNNTSPPRYRLMMSDGRHSFTSFLLATQL
NHLYEEDLLVPNCVCKVKKTSPNTLADGRLVLTVIDMEVIQSAEETGGMIGDPIPYNTDD
NTSQMQSPDSSSSLAASPPPDAVPGSSDRNNNSSSRGFAGRSTMKVSPMSASPMETSPMK
APTMAASPMKASPMKFSPMKTSPMKAPTMDTSPMKASPMKFSPMKASPMKASPMKFSPMK
ASPMKASPMKFSPTKATGSSPGSSTKVISIAGLNPYQSKWTIKARVNNKSNIRTWSNSKG
EGRLFSFEIVDDSGEIRITAFNKEVDKFYSLVEQGKVYYITKASVKPANKQYNTLKNDYE
MTLNANSTIVPCDDSEGVPAVHCDFVPIADLESRDNNDIVDVIGVCKSAEDVSRITTKNS
REVSKRALNLIDTTGKDVTATLWGEEAEKFDGSGQPVVAIKGARLSDFGGRSLSALFSSK
VMVNPDIPEAFRLRAWFDQKGYALDSQSLTETRSASSGPKTNWKSLSNVKDEQMGHREKA
DYFSCVATVLYIRKENCLYRACPSQDCNKKVTDQQNGFYRCEKCHREFPNFKYRLLLSAN
LADFGDNQWVTCFQETAEVLLGHSAETLGQLRDTDEAAFDEVFQRATFTTHIFKNRVKLE
TYNDEARVKVTVLEVRPVDHKEYSKRLLGNIHKLAG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaaatctcactccgggggcacttaaagccgtgatcagaggcacagaggtgaaa
catcttgtgttgcagctgctgagaatccgtcaggtcaataataccagtcctcccaggtat
cggctcatgatgagtgacggtcggcactctttcacttctttcctgctggccacacagtta
aaccacctgtacgaagaggacctcctggtaccaaactgtgtgtgtaaggtgaagaagacc
agccccaacaccttggcagatggcaggcttgtgctgactgtgattgacatggaggtaata
cagtctgcagaggaaacaggagggatgattggagatcccattccatacaatacagatgat
aacacgtcacagatgcaaagtccggactcgagtagctctctcgcagcatcgcctccgcct
gatgcagttcctggatcctccgataggaacaacaacagctccagcagaggttttgcagga
aggtcaaccatgaaagtttcccccatgagtgcttcacccatggagacttcacccatgaag
gctcctacaatggcggcgtcacccatgaaagcttcacccatgaagttttccccaatgaaa
acttcacccatgaaggctcctacaatggacacgtcacccatgaaagcttcacccatgaag
ttttccccaatgaaggcctcgcccatgaaagcttcacccatgaagttttccccaatgaag
gcctcgcccatgaaggcctcgcccatgaagttctcacccacgaaggcaaccggctcctct
ccaggttcctcaacaaaagtgatttccattgctggcctcaacccctaccaaagcaagtgg
acgatcaaagccagagtcaacaacaagtccaacatccgcacctggagtaactctaaagga
gagggcaggctcttctcctttgagatagtggacgacagcggagaaatcaggatcacagct
ttcaacaaggaagtggacaagttttactctctagtggagcaaggcaaggtgtactacatc
accaaggcctcggtgaagccggccaacaaacagtacaacacactgaagaacgactacgag
atgaccctcaatgccaactcaaccattgtgccctgtgatgacagtgagggcgtccctgca
gtccactgtgactttgtgcccatagcagacctggagagcagagacaacaacgacatcgtt
gatgtgatcggagtgtgtaagagtgcggaggatgtctcccgtatcaccaccaagaacagc
agagaagtctccaagagggccctcaacttaatagacacaactggcaaagatgtgacagcc
acgttgtggggagaggaggcggagaagtttgacggctcggggcagccagtggtcgcaatc
aaaggagctcgcttgtctgattttgggggcagatctctctctgctttgttcagttccaaa
gtcatggtcaacccagacatacccgaggcctttagactgagggcatggtttgaccagaaa
ggctacgcgctcgacagccaatccctgacagagacgaggtcagcgagcagtggaccaaag
acaaactggaaatcactgagcaatgttaaagatgaacagatgggacacagagagaaggcg
gactacttcagctgcgtggcgacggtgctgtacatccgtaaggagaattgtctgtaccgg
gcctgtccgtctcaagactgcaacaagaaggtcacagaccaacagaacggattttaccgc
tgcgagaagtgtcacagagagttccccaacttcaaatacagactcctgctttctgccaac
ttagcagacttcggggataaccagtgggtgacatgcttccaggagacagctgaggtcctg
ttaggtcacagcgcagaaacgctgggacagctgagagacacagacgaggcagcgtttgat
gaagtctttcagagagccaccttcacaactcacatctttaaaaaccgagtcaagctggag
acgtacaacgatgaggctcgagtgaaggtaaccgtcctggaagtccgtccagtcgaccac
aaggagtacagcaagagactcctcggcaacatccacaaactggccgggtga
DBGET
integrated database retrieval system
