Semicossyphus pulcher (California sheephead): 138594597
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Entry
138594597 CDS
T10596
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03030
DNA replication
spul03410
Base excision repair
spul03420
Nucleotide excision repair
spul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138594597 (rfc1)
03410 Base excision repair
138594597 (rfc1)
03420 Nucleotide excision repair
138594597 (rfc1)
03430 Mismatch repair
138594597 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spul03032
]
138594597 (rfc1)
03400 DNA repair and recombination proteins [BR:
spul03400
]
138594597 (rfc1)
DNA replication proteins [BR:
spul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
138594597 (rfc1)
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
138594597 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
RuvB_N
AAA_30
AAA_17
AAA_14
Rad17
AAA_16
NTPase_1
AAA_33
AAA_18
nSTAND3
AAA_7
RNA_helicase
BRCT_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
138594597
NCBI-ProteinID:
XP_069521845
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MDIRRFFAPTAAKPVVQKPAPNGNIKTEEKKKKKNPLSSDEEVKNKKKATSKVKSSKQEE
KQKDSEKKRKKHAIIESDSEDEKPVRKANKSSKEKKTTSKPEPPPKKDPVQYVSETDSDS
DNFQSLKEVSKPKQNGTSKPTKSDSSSPGVKAGMKSPVRPSSTQGKTAVKSPVPVTPKSA
PPPQPKHTPTSVFDYFGGGTVQRSDKKLVASTKRKAPTQDTDDQLTDEQIAIELQMDEDM
ELEKQIHEDEEFARTLAMLDEEPQAKKARKGSDEKQAPTPSTSKAKQSSSMSEDVISPSP
KRNPSPLKASSKLAIMKKKAEERDEGPKGKTPISPKKIKISPKKEPIASSSSDMKFTPKA
GTTPIAVKTSPKKPERTTTSPDDPEKKKANASAYRNFLNRDGPRALGSKEIPQGAENCLE
GCVFVLTGVLESMERDDAKALVERYGGKVTGNVSKKTTYLVQGRDSGVSKFEKAESLGTK
ILDEDGLLELIRTKPGKKSKYEIAAEAESKASKTRTPPNNKTKSTPKAQKISPSKGNSRS
PHTPSPSKTGLSQGHSSRARDNGTPPGRGSGSTARRELGLSSSSSSAPQPSPTGEGTSLL
WVDKYRPRSLKTVLGQQGDQSCANKLLRWLQKWHKHHSGGPSKPAAARFGKFGGKDDGSG
FKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKVVVAESLNNTSIETFY
KGTSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIRSSKIPIICMCNDRNHQKIRSLA
NYCFDLRFQRPRLEQIKGAMMSIAFKEGIKIPPPALNEIILASNQDVRQVIHNLSMWSAR
DKVMTYDQCKSDAAKARKDMKIGPFDVCRKVFAAGDETAHMSLLDKSDLFFHDYSLAPLF
VQENYLHVRPKAAGGDLKSHLVLLSKTADSISDGDLVDRRIRSGQNWSLLPTQAIYASVL
PGELMRGYMSQFPTFPSWLGKYSSTSKHSRIVQELSSHMGLKTLSSRQSVNLDYLHYLRQ
ALLSPLQRRGAEGASEAVQLLDDYQLIREDVDSIMEISVWGGQPDPYSKLDSKVKAAFTR
AYNKEVHLTPYSLQVVKKGRRGGGGGEAELGGEDADNEVHESEEEGEGLKADAMIKQKKA
RATKETKKEKKEDSGKGKGKGKGKGKK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggacattaggcggttctttgcaccgactgcagccaagcctgtcgtgcagaaaccagcc
cccaatggaaacatcaaaacagaggagaagaagaagaagaagaatcctctctcttcagac
gaggaagtgaaaaataaaaagaaagcaacctcaaaggtgaaaagctccaaacaagaggag
aaacaaaaggacagtgaaaagaaaagaaagaagcatgccatcatagaatcagactcagag
gatgagaaaccagtgaggaaggcaaacaaatcctccaaagagaaaaaaacaacaagcaag
ccggagccccctcccaaaaaggatcctgtgcagtatgtctctgaaacagactcagacagt
gacaactttcagtcattgaaggaggtctctaaacccaagcagaacggcacgtccaaacca
acaaagtccgatagttcgagtccaggagtcaaagcgggtatgaagtctcctgtcaggccc
tcctctacacaggggaaaactgcagtgaagtctcctgtgcctgtcactcctaagtcagct
ccgcctcctcaacccaaacacacccccacctcagtattcgactacttcggtggtgggact
gttcagcgatcagataagaagcttgtagccagcaccaaacgaaaggctccgacgcaggac
acagatgatcagttgactgatgagcaaatcgccatagagctgcagatggacgaggacatg
gagctggaaaagcagatccatgaggacgaggagtttgccagaacactggccatgctggac
gaggagcctcaagcaaagaaggctcgtaaaggctccgatgaaaaacaagcccctactccc
agcacgtcaaaggccaaacaaagcagcagcatgtcggaggatgtgatcagtccgtctcca
aagaggaacccctcccctcttaaagccagctccaaactggccattatgaagaaaaaggct
gaagagagggacgaaggaccgaagggcaaaacaccaatttcgcccaaaaaaataaagatc
tctcccaaaaaggagccaatcgcctcgtcaagctcagacatgaagttcacacccaaagca
ggaaccacgcccatcgcagttaagacttctcccaagaaaccagagcgcacaactacaagt
cccgacgacccagagaagaagaaagccaacgcttcagcttacaggaacttcctcaacaga
gacggaccacgagcgctgggctccaaggaaatcccacagggggcggagaactgtttggag
ggctgtgtgtttgtgctgacgggggtcctggagtccatggagagggacgacgccaaagcc
ctcgtcgaacgctacggaggcaaagtgacgggtaacgtcagcaagaagaccacctacctg
gtgcagggcagagacagcggggtgtccaagtttgagaaggcggagagtttgggtacaaag
atcctggatgaggacggtctgttggagctgatcagaaccaaaccaggaaagaagtccaag
tacgagatcgctgcggaggctgagagcaaagcctcaaagaccaggactccccccaacaac
aagaccaagagcacccccaaagcccagaagatctctccctcaaagggtaattcccggtcc
cctcacaccccaagtccgtcaaagactggcctgtctcagggtcacagttccagggcgaga
gataacggcactccacctgggagaggatcaggtagcacagcgcggagggagctgggcctg
tcctcctcgtcatcatcagccccacaaccttcgccgactggggagggcaccagcctgctg
tgggtggacaagtaccgcccgcgctctctgaagactgtgcttggccagcagggagaccag
agctgtgccaataagctgctacgctggctgcagaagtggcacaaacaccacagcgggggc
ccttcaaaaccagcagcagcgaggttcggtaagtttggagggaaagacgatggatcagga
ttcaaagctgccctgctgtctggacctccgggcgtggggaagaccaccacagctgccctc
gtctgcgaggagttgggcttcagctacgtggagatgaacgccagctgcactcgcagcaaa
aacagcctgaaggtggtcgttgcagagtcactcaacaacaccagcatcgagaccttctac
aaaggcacgtctcagacagtgagcagcaaacacgtcctgatcatggatgagatcgatggt
atggctggaaacgaggaccgtggaggaatccaggaaatgatcggcctgatcagaagttca
aagattcccatcatctgcatgtgtaacgatcgtaaccaccagaagatcaggtcgctggcc
aactactgcttcgacctgcgcttccagaggccgcgactggaacagatcaagggagcaatg
atgtcaatcgctttcaaggagggaatcaagatcccgcccccagctctgaatgaaatcatc
ctggcctccaatcaggatgtccgtcaggtgatccacaacctgagcatgtggtcggccaga
gacaaggtgatgacgtatgaccagtgcaagtctgatgcagctaaagcccgcaaggacatg
aagattgggccgtttgacgtttgtcggaaggtgtttgccgcaggggacgagactgctcac
atgagcctcctcgacaagtctgacctcttcttccacgactactcgctggcaccgctcttt
gtccaagagaactacctgcatgttcggcctaaagctgcgggaggtgatctaaagtcccac
ctggtgttgctcagcaagactgctgactcgatctctgacggagacctggtggacagacgg
atccgctcagggcagaactggtcactgctgcccacccaggccatctatgccagcgtgcta
ccaggcgagctgatgagaggctacatgagtcagttccccacctttcccagctggctcggc
aaatactcgtccaccagcaaacattcccgcatcgtgcaggagctgtcctcacacatgggt
ctaaagacgctgagcagcaggcagtcggtgaacctggactacctgcactacctgcgacag
gcgctgctgagcccgcttcagaggagaggagcggaaggagccagcgaagccgtgcagctg
ctggacgactaccagctcattagggaggacgtggacagcatcatggagatcagcgtgtgg
ggcggacagccagacccctactccaaactggactctaaggtgaaagcagcattcacacgt
gcctacaacaaagaagtccacctgacgccgtactccctgcaagtggtgaagaaaggccgc
cgtggtggtggcgggggggaggcagagttgggaggagaggacgcggacaacgaggtgcac
gaatctgaggaagaaggggaggggctcaaagcagacgctatgatcaaacagaagaaggcc
agagccaccaaggagacaaagaaagagaagaaggaggattctgggaagggcaaagggaag
gggaaaggcaagggcaagaaatga
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integrated database retrieval system
