Semicossyphus pulcher (California sheephead): 138595277
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Entry
138595277 CDS
T10596
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03440
Homologous recombination
spul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138595277 (palb2)
03460 Fanconi anemia pathway
138595277 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spul03400
]
138595277 (palb2)
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
138595277 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
138595277 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
138595277
NCBI-ProteinID:
XP_069522742
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MESNMGNILHCEDQLKTTLHFDDKEKLRRKLALLQREYLRTAQRLQRAERSEAVRIHVRS
RIAQQNHQDQRDPEVTSNPCHNPSSLTLNTTNGTVSGVHQCQEHTGGPAVSGNFRKSQVI
RFLLPTDAACPQTPDSSHDAGRGHKSTPALRLRSRRSRLRWERRSAAETGRSTDNSEDGG
EQSERMETAGTEGGEERVETAGAEVVNESDELCSSTESESPSLLLTHWNTCGQSEAGNTE
GKETQGRQERRGKESESTSLLLKCLDSAIDTERREQHGTQNARREEKQGGEEGGNSGEQM
DRGMCEDSKGKNAEQSAAEKKESPDNTVETIEEKSEMAEGELDVNGAGLKDSCTLVEGLL
FPAEYYVRTTRRMSSNQIQPDMQAVILSQLNTGQRRRSRGRGRGSNRHTHNNQGSDQHSQ
SDFSSPTSVSPPVVESPAAGTPAELSSQDQISADACAAPTVTSARPARGRRRRGRGRGRA
QTPRCSVSLATHQLDPERAPEDPPPTSTPMSSSPSDDPKPCLTPGEAVPEVAGVYPIFVK
SSDRTNRSTPMSTSKRSWRSLLLPSPPPAQTSLLPLPSLSSGALVNNLINFDIPQDFHLP
DDQFASLKLQKLRGVAVESGVEHFTSPFYNTRRSIRRSGTPQSPVMPLSLPLSLTPKIAN
SSHSVEAKQAAAQSKHLEECPNKRPLNEESECQTHVSSTGSVPPVQDRAAGSVDQDAPLL
TFADPPTGQLNDNVTVHSEELQIKESSVISSKEQTDSPGVARHVEDQRSTNRRTEDKAII
KTLSFDSPSQKTPEVPSRNRSACNESPVQHHKVKYSDKHAKESPERTRRVHSQLLMSPLL
ASAPCPIITPHLPSSAAPSSPALPSLGPTPHPVPAAIPLTSSPSAPALTLPPPHSPSTQV
LSPPPLSPCLSLSSLHPSQSPMSPCAGQIQAISEPSQRTESATCQPVSGSQEQCSGRQVG
VRIAEPAEEHSLRCIHTLKVPAGGRLVDACCLTLPSGGLCVAAAGKWAVCLWTQTAASDW
SLTHTWAFKEPVINVFPVPDAAGLMCVTLGQLEIREVRMLSCSSLSQVQLCEGLVQTVVG
VSKSRVVTTSHSACGSTLHVFTLSDSGSTWSSRPLVSPGVCVGALAPVDGLSDALIGTDE
GGHLFIWNLKTGQLLQRIILTDGLAHTACLRGYSYCGVLFVLLQHQLLSSLEEEERKAAA
KEEEKKKTALFALVAVNPLSGKSVLATRLYPPKAWSGRLCEADVYSSSVVGLSQTGCVCV
WELGRKGARRMVWAPESEGWQLAQWGGGGTLVTGHHNGDISLHGCSLNQTSL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggagagcaatatgggaaatatcttgcactgtgaggatcagctgaagactacactgcac
tttgatgacaaggagaagcttcgtaggaagttggcattgttgcagagggagtacctcagg
acagcccagagactacagcgtgctgagcgttcagaagctgtacggatacacgtgaggagc
aggattgcacagcagaaccaccaggaccagagagacccagaggtgacatctaacccctgt
cataacccatcttcattgacactgaacaccaccaatgggacagtgtcaggtgtacatcag
tgccaggaacacactggaggtccagcagtttcaggaaacttcaggaagagccaggtgatc
aggttcctgctccccaccgatgccgcttgtccacaaacaccagattccagccatgacgca
ggtagaggtcacaaatccactcctgccctgcgcctcagatcacgacgcagccgcctgcgc
tgggagaggaggagtgcagctgagacgggcaggagcacagacaacagcgaggacggagga
gagcagagtgaacggatggagactgctggaacagaaggaggagaagaaagagttgaaaca
gcaggagcagaggttgtgaatgaaagtgatgagctatgttctagtacagaatctgagtct
ccctctctgctgctgacacactggaacacttgtggacaaagtgaagcaggaaacacggag
ggaaaagagactcaagggcgacaagaacgaaggggaaaagaatccgagtcaacgtctttg
ctgcttaaatgtttggactctgctatagacactgaaagacgggaacaacacggcacacaa
aatgcaagaagagaggagaaacaaggaggagaggaaggtgggaatagtggagaacagatg
gatcgagggatgtgtgaagacagcaagggtaaaaatgcagagcaaagtgcagcagagaaa
aaggaaagtcctgataatactgtggaaacaatagaggaaaaaagtgagatggctgaagga
gagcttgatgttaatggtgcaggtctaaaggactcctgcactctagtggagggactactt
ttcccagctgagtactatgtccgaaccacgagacgtatgtcatctaaccagatccagccc
gacatgcaggccgtcattctctcccagctgaacacgggacaacgtagaaggagccggggg
cgtggcagaggctcgaacaggcacacacacaacaatcaggggtctgaccaacactcccaa
tcagacttctcctcaccgacgtctgtgtctccacctgtagtggaatcccccgctgctggc
acacctgctgagctgagcagtcaggatcaaatatcagcagatgcttgtgctgctcctacg
gtcacctctgctcgaccagcaagaggaaggaggagacgaggtcggggcagagggagagct
cagaccccacgatgctctgtaagtttagccacccatcaactagatcctgaacgagctccg
gaagatcctccgcccaccagcaccccgatgtcttcctccccgtctgatgatccaaagccc
tgcctcactccaggagaagctgttccagaggtagcaggtgtctatcccatctttgtgaag
agcagcgacaggaccaacagatccacaccaatgagcacaagtaagagaagctggcgatct
ctcctcctgccctcccctccacctgcccaaacatctctgctgcccctcccctctctgtcc
tccggcgcgctggtcaacaacctgattaactttgacatcccgcaagacttccatctccct
gacgaccagtttgcctcactaaagctgcaaaagctccgtggagttgctgtggaatcagga
gtggaacatttcacatcgccgttttataacacgcgcaggagcatccggcgctctggcact
ccccaaagcccagtgatgcctctgtcgctcccactcagcctcacgcccaaaattgcaaat
tcatctcattctgttgaagcaaaacaagctgctgcacagtccaaacaccttgaggagtgt
cccaataaacggcccttaaacgaagagtcagagtgtcagactcatgtaagctcaacggga
tctgtgccaccggttcaagatcgtgctgctggttctgtggatcaagatgctcctctttta
acctttgcagaccctcctacaggacaactgaacgataatgtcaccgtgcactcggaggaa
cttcaaataaaagagtcttctgtcatttcatcaaaggaacaaacagattccccgggcgta
gctcgtcatgtggaggatcaaaggtccacaaaccgccgaacggaagacaaagcgatcatc
aaaactctttcctttgattccccttcacagaaaacccctgaagtgccttctagaaaccgc
tctgcatgtaatgagtctcctgtgcagcatcacaaggtgaaatattctgacaaacacgca
aaggagtcccctgaacgcaccagaagagtccactcccagctcctcatgagtcctcttctt
gcatcagcaccctgccccatcataaccccacacctgccctcatctgctgccccctccagc
cccgcgctaccatcactaggacccacccctcaccctgtccctgctgccatccctctgacc
tcctctccctccgccccagctctcaccctgcctccccctcacagcccgtcaacccaggtt
ctttcccctccacctctctctccctgtctctctctctcttccctccatcctagccagtcc
cccatgtccccatgtgctggtcagatccaggctatatctgagccatcgcagaggactgaa
tcagctacctgccagcctgtctccggcagtcaggagcagtgctcaggtaggcaggtgggc
gtgaggatagcggagccagcggaggaacacagcttgagatgtatacacactctgaaggtc
cctgcaggaggccgtctggtggatgcgtgctgtctgacccttccctcaggtggtttgtgt
gtagcagcagctggaaagtgggcagtgtgtctctggactcagaccgcagcttctgattgg
agcttaacacacacctgggccttcaaagagccggtgatcaacgtgtttcctgtccctgat
gctgctgggttgatgtgtgtgactctgggtcagctggaaatcagagaagtgaggatgttg
tcgtgctccagcctgtctcaggtgcagctctgtgaggggctggtccaaactgttgtgggt
gtttccaagtccagagttgttaccacctcccactcagcctgtggttccaccctgcatgtg
ttcacgctctcagacagtggcagcacatggagctctcggcctctcgtgtctcctggtgtt
tgtgtcggggccctcgctccggtggacggactctcagatgctctaatcggaacagatgag
ggaggacatctcttcatctggaacttaaagacgggtcagctgctgcagagaattatcctc
acagatggtttagcgcacaccgcttgtctcaggggttactcctactgtggagtgttattt
gtcctgctgcagcatcagctgctcagctccctggaggaagaggaaagaaaggccgcagca
aaagaggaggagaagaagaagactgcactgttcgccttggttgcagttaaccctctgagt
ggaaaatcagtcctggctactcggctgtatccgcccaaagcgtggtctggcaggctgtgt
gaagccgacgtgtacagctccagtgtggtggggctgagtcagaccggctgtgtgtgtgtg
tgggagcttgggcgcaagggggcccggaggatggtgtgggctcctgagagcgaagggtgg
cagctggctcaatgggggggcggaggtacactggtgactgggcatcacaatggagacatt
agtttacacggctgcagcctgaatcagacttcactctga
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