Semicossyphus pulcher (California sheephead): 138597038
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Entry
138597038 CDS
T10596
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
spul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138597038 (pcf11)
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
138597038 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138597038
NCBI-ProteinID:
XP_069524655
LinkDB
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Position
Unknown
AA seq
1595 aa
AA seq
DB search
MDCLLINSHVIEKARVGFPGLLGSKMDDKAARDDACREYQSSLEDLTFNSKPHINMLTIL
AEENLQFAKDIVAIIEAQISKAPSSEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDESTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVINASIHVNP
KFLKQSEEVASPPPVPAQKSPPQSPPAAAPTPAPQPTPAVSQSSLTQEQLIRQQLLAKQK
QLLELQQKKIELELEQTKAQLAGGFVIPGSTPVSSPAAASAAQKPVSQTAPVVRPWIPPQ
TQADSKPPTRDPRLNRGGTPAAPQHKEQPAGKKTDTTGSPALTPEKSNRPDKSRIQRKEV
LEEKPKSKSPSPMAKSVMSKTKQVEPEVQKPADGTKKDPRLRKRTQDKSGEAKDEELKEK
KRCTDKKEREEALRGADPQRSNKGKLANGSMSKHDRDESNEKPEFKTGGNARTHARKRTR
SRSRSRSPATSPKRKDRRSPKSRARSSSLSPSPSHKPSKPRRVRADEPEHGKPGREDRPT
PKKSQSDSRRSKRPNEDRHPEARDSHSPRGHDGGAKETKEAPHRWRSGWEENKHPVLQED
SHVKPGPQRHKQYGTPTRPSTPRTPKHRLSVDANMQIPEALNSASKKDLLRRASKRLESG
EISQEDFLNMAHQIKSFFQYQEEKQQHSETWDRSGNFPAKKPQLLTTPPSAQPRQHDTMD
AAELSYYEHKSKLRKTQVTHRPAGEEWEGDESPEEAEGTGQGEKTGGGRSAGRRAPRERQ
GERRSKEREEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPRESTEREWNSPLTER
QRDEQKSGYDAPRRYGPPADPRNPDPRRPEGPPSGTVVHRKCPSPAGLEAPTPRFERERL
SPLHQRDSAEASPVPRFESPNSEHSDDTPLNLDAPTLHPHPKSILKVPGRAGPLGSVRQH
SDSPGHTPPHDGGHAPTRYDAPAHIGPSRPHPPGWYEGGGGPGRYDDTSRFEGPHPPGPG
RFEGGGTPHHNMPERFDGPHMSHGPMRGGEGMGRFEGPPHPQGPGRFDGPIGQQPPVRFE
GPGPGPGHFEAPMQRFNNMAPGPGSGPMGFQQQRPLRFDGPLNQMGSMRFDGPGPMRFEG
PGQPGPRFDLPNVPQQGGPPMYECPPGQQGPLRFTPQHNLQPPMRQMTPSVYENPIAPQQ
NFNMAPQRFPEPMNPQFPGGPMAFPTQPAANFNMQPTPPFSQPGPVPFYNPAAPAVTMQQ
TVNMMNMNQPFLPQNTVPFRQPAPVVPPENHFGQVDVNDLLTKLISNGIIKPSLPDAVLT
TGTESVAPAAAPVVEEEEEEEQELEEGDVLDLTSFSIDDMKQRYESVVTRLYSGNQCCLC
SMRFTAAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYTLTDWIEFEEIADLEERAKS
QFFEKVNEEEVQKTQAAAKEKEFQSVKAAKDQVAELCEICQEPFETYWVEEEEDWFLKNA
IRVDDKNFHPSCFEDYKNSSYIDVTPSPNKLLTEHPLSAFIKEEEEEEQEEETSCALAAA
SVSQEVKSEVVEPPVVKTEEEEEVLTEVQSEENPA
NT seq
4788 nt
NT seq
+upstream
nt +downstream
nt
atggactgcttgctaatcaatagtcatgttatagaaaaggctcgtgtaggtttccccggg
ttgctcggctcaaagatggacgacaaagcagcgagggacgacgcctgccgagagtaccag
tcctctctggaagacctgacgttcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctccagttcgccaaggatatcgtcgcaattattgaagcgcaaataagc
aaggccccatcctccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaagcactagaaagagtctgttcaagttacggtcgacgtgggac
gacgtgtttcctctaaagaaactgtatgcgctggacgtgcgggtcaactcagtggacccg
gcctggcccatcaaaccgctgccacccaccgtcatcaacgccagcattcatgtcaacccc
aagtttttaaaacagtctgaggaggtcgcctctcctccgcctgtccccgcccaaaagtcg
cctccgcagtctccacctgcagcggcgcccacgccggctcctcagccgacccccgccgtc
agccagtccagcctgacccaggagcagctgatccgacagcagctgctggccaaacagaaa
caacttctggagctgcagcagaagaagatcgagctggagctggagcagaccaaagctcag
ctggctggaggctttgtgatccctggatccactccagtgtcatctccagcagcagcgagt
gcagcccagaaaccggtgagccagactgctcctgtggtccgaccctggatcccccctcag
actcaggccgactccaagccgcccaccagagacccccgtctgaaccgaggcggcacccca
gctgccccccagcacaaagaacagcctgctgggaaaaaaacagacacaacaggaagtccg
gcactgacccctgagaagtccaaccggcctgacaagtccaggatccagaggaaggaggtg
ttagaggagaaacccaagtccaagtcgccgtctccgatggccaaaagtgtcatgagtaaa
accaaacaggtggagcctgaggttcagaagcctgctgacggcaccaagaaagatccccgg
ctgaggaaacgtacgcaggataagagcggagaggccaaagacgaggagctgaaggagaag
aagagatgcactgacaagaaggagcgagaggaggctctgagaggagcagaccctcagagg
tcaaacaaagggaagttggccaacggctcaatgagcaaacacgaccgcgacgagtccaac
gagaaacccgagttcaagaccggaggcaacgcccgcacacacgccaggaaacgcacacgc
tcacgctccaggtcgcgctcccctgccacctcccccaagaggaaggacaggaggtcccca
aaaagcagagccaggagcagctccttgtccccgtcgccctcccacaaacccagcaaaccc
agacgagtccgcgcggatgaaccggagcacggcaagcccggtcgagaggaccgccccaca
ccaaagaagagccagtctgacagcaggaggtccaagaggcctaatgaggaccggcacccc
gaagccagagactctcactccccacgaggccacgacggaggagccaaggagacaaaggag
gctcctcaccgctggaggagcggctgggaggagaacaaacacccggtgcttcaggaggat
tctcacgtgaagcccggacctcagagacacaaacagtacggcaccccgacccgcccctcc
accccccgaaccccgaagcatcgcctcagcgtggacgccaacatgcagatcccagaggcc
ctgaactccgcctccaagaaggacctgctgaggagggccagtaaacgtctggagagcggc
gagatctcgcaggaggacttccttaacatggcccaccagatcaaatccttcttccagtat
caggaggagaagcagcagcactctgagacctgggaccgctctgggaacttccctgccaag
aaaccgcagctgctgaccacacccccctctgctcagcctcgccaacacgacaccatggac
gccgcagagctgtcgtactacgagcacaagtccaagctgaggaagacgcaggtcacccac
cgacccgccggagaggagtgggagggagatgagagtccagaggaggccgaggggacgggg
cagggcgagaagacgggcggaggacggagcgctggacgccgggcgccacgggaacggcag
ggtgagaggcggagcaaagagcgcgaggagccccgccccccactcggccccatgatcgag
gagtacaaccacggaaaagagttccccacgctgaagtctctgcccggcctccgcttcagg
aggagagccgacccccgagagtccactgagagggagtggaactcgccgctgacagagcgc
caacgtgacgagcagaagagcggctatgacgctccacggaggtacggccccccagccgac
ccaagaaacccagaccctcgtagaccagaggggcccccctctggcacggtggtccacaga
aaatgtccgagccccgctggtctggaagctccaaccccaaggttcgagcgtgagcgcctg
tcacctctgcaccagagagactcggccgaggcgagtccagtccctcgcttcgaaagtccg
aacagcgagcactcggacgacacgcccctcaatctggacgcccccactctacaccctcac
cccaaatccatcctcaaggtgcctggccgcgcaggaccgctgggttcagtccgccagcac
agcgactctcccggacacacccctcctcacgacggaggacacgcccccaccaggtacgat
gcccccgcacacataggcccctccagaccccatcctccggggtggtacgagggcgggggt
ggccctggacgctacgatgacacgtcccggtttgaggggcctcaccccccgggccccggc
aggtttgagggcggcggaaccccccatcacaacatgccagagcggtttgatggcccccac
atgtctcatgggccaatgagaggaggggagggtatgggacgctttgaggggccgcctcac
cctcagggccccggcaggttcgatggtcccatcggtcagcaaccaccagtcaggtttgag
ggcccggggcctgggccgggtcactttgaggcccccatgcagcgctttaacaacatggct
cctggtcctggatctgggccgatgggcttccagcagcagcggcccctgcgctttgacggc
cccctgaaccagatgggctccatgaggtttgatggccccgggccgatgcgttttgagggc
cctggtcagccgggaccccggtttgacctccccaatgtgccccagcagggtgggccccct
atgtacgagtgtccccccggacagcaggggcctctcaggtttaccccccagcacaacctg
cagcctcccatgaggcagatgaccccgtccgtctacgagaaccccattgccccccagcag
aacttcaacatggccccccagcggttcccagagcccatgaacccccagtttccggggggg
ccgatggcgttcccgacgcagcctgcagccaacttcaacatgcagccgaccccgcccttc
agtcagccaggccccgtccccttctacaaccccgccgcccccgctgtcaccatgcagcag
acggtgaacatgatgaacatgaaccagcccttcctgcctcagaacacagtgcctttcaga
cagcccgctccggtcgtccctccagagaatcacttcggtcaggtcgacgtcaacgacctg
ctcaccaaactcatctcaaacggcatcatcaaaccgtcgctgcctgatgccgtgctgacc
accggcaccgaatctgtggctcctgcagctgctccagtggtggaggaggaggaagaggag
gagcaggagttggaggagggagacgtgctggacctcaccagcttcagcatcgacgacatg
aaacagcgttatgagagcgtggtgacgcggctgtactcggggaatcagtgctgtctgtgc
agcatgaggttcaccgccgcgcagaccgacatgtacgccgaccacctcgactggcacttc
agacagaaccacgccggcaaggtggccagcaagaaggtcacacaccgccgctggtactac
accctcacggactggatcgagtttgaggagatcgccgacctggaggagcgagcgaagagt
cagttctttgagaaggtgaacgaggaggaagttcagaagactcaggcggctgccaaggag
aaggagttccagagtgtgaaagccgccaaggaccaagtggcagagctgtgtgaaatctgt
caggagccgttcgagacgtactgggtggaggaggaggaggactggttcctgaagaacgcc
atcagggtcgacgacaagaacttccatccctcgtgctttgaagattataaaaactcgtcg
tacatcgacgtcacgccgtcgccgaacaagctgctcaccgagcacccgctgagcgccttc
attaaggaagaagaagaagaagaacaagaggaggagacttcctgtgccctcgccgctgcc
tcagtctcgcaggaagtgaagtctgaggtggtcgagcctcccgtcgtgaaaacagaggaa
gaggaggaggttttaacagaagtgcaatcagaagagaacccggcgtaa
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integrated database retrieval system
