Semicossyphus pulcher (California sheephead): 138597856
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Entry
138597856 CDS
T10596
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03440
Homologous recombination
spul03450
Non-homologous end-joining
spul04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138597856 (rad50)
03450 Non-homologous end-joining
138597856 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
138597856 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spul03032
]
138597856 (rad50)
03400 DNA repair and recombination proteins [BR:
spul03400
]
138597856 (rad50)
DNA replication proteins [BR:
spul03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
138597856 (rad50)
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
138597856 (rad50)
BRCA1-C complex
138597856 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
138597856 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
ABC_tran
AAA_29
zf-met
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
138597856
NCBI-ProteinID:
XP_069525479
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR
VKDGEKVSLSSKCGELDREMISSLGVSKPVLNHVIFCHQEESNWPLCEGKALKDKFDSIF
AATKYIKALETMRQLRLKQSHTVKECQVELRYLKQNKEKAQQIREIVATKEAQLMTSKDS
VQQIENQIDPLEIRLNDIDMKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEQLQDVYQNHQRTVREKERRLTDCQKELERAGRECQRLNRVKADLLVEQGRLQLEADRQ
TQNIKNRDSQVRSLSSYLEMEGYDRPPFTSLQLESFNRHVTQRLEQEKDTVSQVLADLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNIRAELQRLEGSSSRLQELENE
LAKAERELQSAVQSSNVDELKAEVVELQREKAELDRAQRQLDKEMEMLNTHTTARTQVDM
LNKDKTEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYSKSKEINSTRDRLAKLNKD
LASSEQNKSHIAAEVRKKEQQLANDQEKFFNVCGSQDLEQDLSKLQEDLEKVSKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSEPDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDDMVALRPVRQSIIQFEEKELPELRNRLQTVNREIERLKGDVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLREVERKIAQYAAKLQGVDLSRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQILKSAVNETRAEKLQLSSDMQKQQQLEEQCVEFTTEIQS
LTRDIREAKEQLSPLSAALEKLQQEKQELVERKRQRQEEGQEKINAIKERVKVITTLERD
INKYVDDGKDKYKEEKESELQETNTQLHEAEKHKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKREALMKDMGNMQVLQLRQERREAERKLEDLKKNRSVAVGRQKG
FEEEILHYRKELREDQYDKADERYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENAFAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatagacaagatgagcatcctcggggtaaggagctttgggattgaggataaa
gacaaacaagtgatctctttcttcactcctctgactgtgttggttggacccaatggagcc
gggaaaacgactattattgagtgccttaagtatgcaacatctggagaacttccccctgga
tcaaaaggaggtgcttttgttcatgatccaaaggatgcccatgagacagatgtgcgggca
cagattcgactcctattctccgacgttaacggagagaaagtgacgattcatcgctccatg
tcctgcactcagaaggcaaagaactactcctttaaaagtctggagcaggtcattaccaga
gtaaaggacggtgagaaggtgagcttgtcatcaaagtgtggtgagctggatcgggagatg
atttcatcgcttggtgtgtcgaagcctgtcttgaatcatgtcatcttttgtcaccaagaa
gagtctaactggccgctttgtgaaggcaaagcactcaaagacaagtttgactccatcttt
gctgcaaccaagtatatcaaagcgctggagacaatgcgtcagctgcgtctcaaacagagt
cacacagtcaaagagtgtcaggtggagctgcgctacctaaagcagaacaaggagaaagcc
cagcagattagagagattgtggccacaaaggaggctcagctgatgacctctaaagacagc
gtccagcagatagagaaccagatcgatccactggagataagactgaacgacattgacatg
aaactggggaaagtgatgaagctggacaacgacatcaaggctttagacagcaggaagaaa
cagatggaggaagacaacaaggagctggaggaaacaatggaacaggtgttccagggttca
gatgagcagcttcaggacgtctaccagaaccaccagaggacggtgagggagaaggagcgg
aggctgacggactgccagaaggagctggagagagctggccgcgagtgtcagagactcaat
agagtgaaagctgatctcctggtagaacaaggtcgcctacagctcgaggctgatcgtcaa
actcaaaacatcaagaaccgggactcccaggttcggtctttgtcatcctatctggagatg
gagggttacgaccgacctcctttcacctctcttcagctcgagagctttaaccgccacgtc
acacagagactggagcaggagaaagacacagtcagtcaggttctggcggacctgcaggaa
aaggagcagcagaagcagcagtccatcgatgaaatgagggacaagaagaccggcctggag
agaactgtggagttgaagagagacctgcagggaaagaagcagcaagagctgaggaacatc
agggcagagctgcagcggctggagggttcatcaagtcgactacaggaactggagaatgaa
ctggccaaggcggagcgtgagctgcagagtgcagtgcaaagctccaacgtggatgagctg
aaggccgaggtcgtggagctccagagagaaaaggctgaacttgaccgcgcccagagacag
ctcgacaaagagatggagatgctcaacacacacaccactgcacgcacgcaggtggacatg
ctgaacaaggataagacagagaaggaggagcaggtacgaaagatcaagtctcgtcacagt
gaggatctggtgtcactactgggccactttcccaacaagagagagctggaggactggatc
tattccaagtctaaggaaatcaacagcacccgggacagacttgcaaaactaaataaggac
ctggcatcaagtgagcagaataaaagccacattgctgctgaggtacggaagaaggagcag
cagttagcaaacgaccaagagaagttcttcaatgtgtgtggcagtcaggatctggagcag
gacctaagcaaactgcaagaagacctggagaaggtttccaaacaaagagccatgctagct
ggagccacagcagtgtacactcagttcatcagccagttaacagaggagcgagagccctgc
tgccctgtgtgccagcggactttcccctcagagccggatctgcaggaagtcatcagtgac
atgcagtccaaactgcggctggtgccagacaagctgaaaaacacagagcaggacctgaag
aggaaggagaggaagagggatgatatggtggctctcaggcctgtcaggcagtccatcata
cagtttgaggaaaaggagctgcctgagttgagaaaccgcctgcagacagtgaacagagaa
attgagaggctgaagggagatgtggaggagcaggagactctgcttggcaccctgatgtca
gaggaggaaacagccaaggcctgcctgcaggacatatctctcatggacagatacctgatg
gacctcagagaggtggagaggaaaatagctcagtatgcagccaaacttcagggagtagac
ctgagcagaaccatccagcaagtcagtcaggagaaacaagaaactcagcacaagctcgac
accacctccagcaagatggagctaaaacgtaagctgatccaggaccagcaggatcagatt
cagattcttaaaagtgctgtgaatgagacgagagcagagaaactgcagctgagcagtgat
atgcagaaacagcagcagctggaggagcagtgcgtcgagttcaccactgaaatacagtct
ttaaccagggacatcagggaagcgaaggaacagctgtcccctctgtctgctgccttggag
aagctgcaacaggagaagcaggagctggtggagcgcaagaggcaaaggcaggaagagggg
caggagaagatcaatgccattaaagagcgagtgaaggtgatcaccaccttggaaagagac
atcaacaaatatgtcgatgatggcaaagacaaatacaaagaggaaaaagagtcagaactt
caagaaaccaacactcagctccatgaagctgagaagcacaaagagaagatcaacaaggag
atgggaaacatccgtcaggacatagacacgcagaaggtccaggagcgctggctgcaggac
aacttgacattgaggaagcgtgttgaggagttgaaggaggttgtggctaaacgtgaagct
cttatgaaagacatgggcaacatgcaggtcttgcagctacgccaagaacgacgtgaagcg
gaacgcaagctggaagacttaaagaagaaccgcagtgttgcagtgggtcgtcaaaaaggc
ttcgaggaggagatactgcactacagaaaagagctgcgagaagatcagtatgacaaagct
gatgagcgctacaaaaacaagatgatcaccatgaggaccaccgagctggtcattaaagac
ctggatctttactacaaggccctcgatcaaacaatcatgaaattccacagcatgaagatg
gatgagatcaacaagattatcagggacctatggcgcagcacctacaggggtcaagatatt
gagtatgtggagataaggtcggatgtggatgagaacgcctttgctggagtgaagcggagg
gtttacaactaccgagtggtgatggtgaaaggagacacagctttggatatgagagggcgc
tgcagtgccggtcagaaggtgttggcatccctgatcatccgtctagccctggcggagacc
ttctgtctgaactgtgggattttggccctggatgagcccaccaccaacctggaccgagac
aacattgagtcactggcacacgccctcgtagaaattattaagagccgctctcgccagcgt
aacttccagctgctgatcatcacccacgacgaggactttgtggagctgctgggtcgctcc
agctacatcgagcacttctaccgcatccgtaaaaaccaggaccagaactctgagatcaca
aagtgcagcatcacctccctctcatcctacctccactga
DBGET
integrated database retrieval system
