KEGG   Semicossyphus pulcher (California sheephead): 138598219
Entry
138598219         CDS       T10596                                 
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
spul  Semicossyphus pulcher (California sheephead)
Pathway
spul03040  Spliceosome
spul04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:spul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138598219 (prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    138598219 (prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:spul03041]
    138598219 (prpf19)
   04121 Ubiquitin system [BR:spul04121]
    138598219 (prpf19)
   03400 DNA repair and recombination proteins [BR:spul03400]
    138598219 (prpf19)
Enzymes [BR:spul01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     138598219 (prpf19)
Spliceosome [BR:spul03041]
 Complex B
  Other components
   Prp19 complex
    138598219 (prpf19)
 Complex C
   Prp19-CDC5 complex
    138598219 (prpf19)
Ubiquitin system [BR:spul04121]
 Ubiquitin ligases (E3)
  U-box type E3
   138598219 (prpf19)
DNA repair and recombination proteins [BR:spul03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    138598219 (prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_EML_2 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SPT8 PEP5_VPS11_N WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_HPS5 U-box Beta-prop_RIG_2nd Beta-prop_Vps41 PROPPIN Beta-prop_Nup120_160 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Tricorn_2nd eIF2A Cytochrom_D1 Ge1_WD40 zf-Nse ATG16 Cep57_MT_bd
Other DBs
NCBI-GeneID: 138598219
NCBI-ProteinID: XP_069526050
LinkDB
Position
Unknown
AA seq 505 aa
MSLFCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAVPTSQPAAAGAGGEPMEINEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEDLVRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTSKVLT
GGADKNVVVFDKNEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDNTIRVWSVTGGNCV
QVVRAHEGGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHSGLVT
GVAFGENAQFLSSAGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtccttgttttgtgcaatttccaacgaggtgccggagcacccgtgcgtctctccggtg
tccaaccaggtgtttgagcgcagacttatcgaaaagtacatcgcagagaatgggacggac
ccgatgaacggacaacccttgtctgaggaacagctcgtagatatcaaagtgtcccatcct
attcgaccaaaggcaccatccgcaacaagcattcctgccattctcaagtcccttcaagat
gagtgggatgctgttatgctgcacagttttactctgcggcagcagctgcagactactcgc
caagaactgtcacatgccctctaccaacatgatgccgcctgcagagtcatcgctcgcctc
acaaaagaggtcactgctgcgagagaagctcttgccacgctcaaacctcaagctggattg
gttgcccctcaggcagtccccacttctcagcctgctgcagcaggtgctggtggagagcct
atggaaattaacgaacaggtgggaatgaccccagagatcatccagaagctccaagacaaa
gctactatcctcactacagaaagaaagaagagaggaaaaactgtcccagaggacctggtt
agagctgaggatctcagcaaataccgccaagtggcctcacatgctggtcttcatagtgcc
agtgttcctggtattctggctctggatctgtgtccctcagacaccagcaaagttctcact
ggtggagctgacaagaacgtggtggtgtttgacaaaaatgaggaacagattgtggcaact
ctcaagggtcacaccaagaaggtcacctctgtcatttaccatccttcccagtccgttgtc
ttctctgcatctccagacaacaccatccgagtttggtccgtcaccggaggcaactgtgtc
caggtggtgcgtgcccacgagggaggagtcactggactctccctacatgctactggagac
tacctgctcagctcctccgaggatcagtactgggccttttctgatatccagactggtaga
gtcctcaccaaagtcacggatgaaagtgctggctgtgctctcacctgcgctcagttccac
cctgatggtctcatttttggcactggtacggctgattcccaaatcaagatctgggatctg
aaggagcgcaccaacgtggccaacttcccgggccactctggtccggtcacatccatcgct
ttctctgaaaatggatactacctggccacaggtgcccaggatagctctctgaaactgtgg
gatctgaggaaactgaagaacttcaagaccatcaccctggacaacaactatgaggtgaag
tcccttgtgtttgaccagagtggtacctacctggctgtcggagggtctgacatccgtgtc
tacatttgcaagcagtggtctgaggtcctcaacttcacagaccattcaggattggtgaca
ggagtggcctttggagagaacgctcagtttctgtcctctgcaggaatggacagaagtctc
aaattttacagcttgtag

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