Semicossyphus pulcher (California sheephead): 138599402
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Entry
138599402 CDS
T10596
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03013
Nucleocytoplasmic transport
spul03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138599402 (upf2)
mRNA cycle factors
P-body specific factors
138599402 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138599402
NCBI-ProteinID:
XP_069527166
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Position
Unknown
AA seq
1289 aa
AA seq
DB search
MTDVCFATSSSMPAERKRSVNMDEKDVCSFTNKDKEKDRDGDRRPGSARDKPKDEAKMSG
KKDSGKEEKRKRIEEEKKKKDEKDRRKKEEEKLKAEEEQKKKEEEEKKQQEEEEKKLQEE
EAKRQREEEAALLKEKEEGHQLHQEAWERHHCRKELRSKNQNAQEGRPEEAFFSRLDSSL
KKNTAFVKKLRTLTEQQRDSLSNDFNSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSL
FHQRYTEFAPLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIY
EQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLMPRKVKLAAEKFGLTFPPSEIISTEK
QQPFQNLLREYFTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEEFATSYQK
LLANTQSLADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFY
ENLVDLKAFVPAILFKDNEKSSQGKDKDEAKDGREGKDSATTTEELELELEALDITDEPL
ELEGPDEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMD
FCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRF
HIRKKDQINIETKNKTVRFIGELAKFKMFTKTDTLHCLKMLLSDFTHHHIEMACTLLETC
GRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPVEKTVKKKRPP
LQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANL
LAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLFSFISFGINQDGSPSALDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQ
RYIWWKKSIDVWTKDHPFPIDIDYMITDTLELLRPKMRLSCSLEEATKQVTELEREVLVK
LGLAMGKDGRSSAMSEGEGLDEEDDDGDDDEEGGAETEEQSGNESEMNEQEEDEGSENEE
EEREEEEEENTDYLTDSNKENETDEENNEVTLRGGGLKHVACAEDEDFIQALDKMMLENL
QQRSGETVKVHQLDVAIPLQLKSQLKKGSSGQPCIAEGESDISDTMQFVMLTRKGNKQQY
KILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPAN
TNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacaagtagcagtatgcctgctgaacgcaagcgctcagta
aacatggacgagaaagacgtttgctcctttactaacaaggacaaagagaaggaccgagac
ggtgacagaagaccgggatctgctcgggacaaaccaaaagacgaagctaaaatgagcggt
aagaaagacagtggaaaggaggagaagaggaagcgtatcgaggaggaaaagaaaaagaaa
gacgaaaaggatcgcagaaagaaggaggaggaaaagctgaaggcggaggaagaacagaag
aagaaagaggaggaggagaagaaacagcaggaggaggaggagaagaagcttcaagaggag
gaggccaaaagacagcgtgaggaggaggcagctctcctgaaagagaaggaggaggggcac
cagctgcaccaggaggcctgggagcgtcatcattgcaggaaggagctccgcagcaagaac
cagaatgcccaagagggtcgacctgaagaggctttcttcagccgcctggactccagcctc
aaaaagaacaccgcgtttgtcaagaagctgcgtactctcaccgaacagcagcgagactcg
ctctccaacgactttaactcgctgaacctcagcaagtacattggtgaggctgtgagctct
gtcgtggaggccaagctgaagatctctgacgtcggctgcgctgttcatctctgctccctc
ttccaccaacgctacactgagttcgctccgttactgttgcaggcctggaagaagcacttt
gaggccaggaaggaggacaaggcgcccaacgtgagcaagctgcgcactgacctgcgtttt
atcgccgaactcaccatcgtcggcctcttcacagacaaagagggtctgtcactgatttat
gagcagctgaagaacatcatcgggaccgaccgtgagacgcacacacacgtgtctgtggtg
atcagcttctgtaagcactgcggggacgacatcgccggtctgatgcctcgcaaggtgaaa
ctggctgctgagaagttcggcctgaccttccctccgagcgagatcatcagcacggagaaa
cagcagcccttccagaaccttctgcgggagtacttcacgtctctcaccaaacacctgaag
aaggaccaccgggagctgcagaacacagagaggcagaacaggcgtatccttcattccaaa
ggggagctgagtgaggacagacacaagcagtatgaagagtttgccacctcctaccagaag
ctgctggccaacactcagtccctcgctgatctgctggatgaaaacatgccggagctgcct
caggacaagactgtgcaggaggagcacggtcctggcattgacattttcacccccggtaag
cctggagagtacgacctggagggagggatctgggaggacgaggacgctcgtaacttctac
gagaacctggtggacctgaaggcctttgtccccgccatcctcttcaaagacaacgagaag
agcagccagggcaaagacaaggacgaggctaaagatggcagagaggggaaggactcggcc
accaccacagaggagctggagctggagttggaggctctcgacatcacagacgaacctctg
gagctggagggacccgacgaggcagaaaatgaggaactggctaaaaaactgctggatgag
caagaacaagaggacgaagaggccaacacggggtcccacctgaagctcattgtggacgcg
ttcatccagcagctccccaactgtgtgaacagagacctcatcgacaaggctgccatggac
ttctgcatgaacatgaacaccaagtccaacaggaggaagctcgtccgggctctcttcacc
gtccccaggcagaggttggatcttctgcccttctactctcgcctggtggcgactcttcac
ccatgcatgtccgacgtggccgaggacctgtgctccatgctgaagggagacttcaggttt
catattcggaagaaggaccagatcaacatcgagacgaaaaacaaaacggtcagattcatc
ggggagctcgccaagttcaagatgttcacaaagacggacacgcttcattgtctcaagatg
cttctgtctgatttcacccatcaccacatcgagatggcctgcacgctgctggagacctgc
ggccgcttcctcttcagatccccggattctcacctgcgtaccagcgtcttactggagcaa
atgatgcgtaaaaagcaggctcagcatctggacgcccgctacgttacaatggtggagaac
gcctactactactgcaaccctccacccgtggagaagacggtgaagaagaagaggccgccg
ctgcaggagtacatccgcaagctgctgtacaaggacctgtccaaggtcaccactgagaag
gtgctcaggcagatgagaaagctgccctggcaggaccccgaggtgaagagctacctgatc
tgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctg
ctggccggcctggtggcctaccaggaggacgtgggcatccacgtggtggacggggtgctg
gaggacatcagactgggcatggaggtcaaccagcctaagttcaaccagcggcgcatcagc
agcgccaagttcctcggcgagctctacaactaccgcatggtggagtcagccgtcatcttc
cgcacgctcttctccttcatctccttcgggatcaatcaggacggcagcccgagcgccctg
gaccctccggagcacctgttccgcatccgcctggtctgcaccctgctcgacacctgcggc
cagtacttcgaccgcggctccagcaagaggaagctcgactgtttcctcatctacttccag
cgctacatctggtggaaaaagagcatcgacgtctggaccaaggaccacccgttccccatc
gacatcgactacatgatcacagacaccctggagctcctccggcccaagatgaggctcagc
tgctccctggaggaggccaccaagcaggtcaccgagctggagagggaggtgctcgtcaaa
ctaggcctggcgatggggaaggacggccgctccagtgccatgagcgagggcgagggtctc
gacgaggaagacgacgacggcgacgacgacgaggagggcggggcggagaccgaggagcag
tcgggcaacgagagcgagatgaacgaacaagaagaggatgaagggtccgagaatgaggag
gaggagagggaggaagaggaggaagagaacaccgactacctgaccgactccaacaaagag
aacgagaccgatgaggagaacaatgaggtcaccctccgaggcggagggctgaagcacgtg
gcctgcgcggaggacgaggacttcattcaggctctggataagatgatgctggagaacctg
cagcagcgcagcggcgagacggtgaaggtgcaccagctggacgtggcgatcccgctgcag
ctgaagagtcagctgaagaaggggagctccggacagccgtgcatcgcggagggagagtcg
gacatctccgacaccatgcagttcgtcatgctgacgcgcaagggcaacaagcagcagtat
aagatcctgaacgtgccgctgtcctcccacctggcggcgaaccacttcaaccagcagcag
gccgagcaggaggagcgcatgaggatgaagaagctcacactggacatcaacgagaggcag
gagcaggaggactaccaggagatgatgcagtccctcgcacagcgtccggctccggccaac
acaaaccgggagcgccgccctcgctaccagcacccgaaaggcgctcccaacgccgacctc
atcttcaagactggaggaaggagacgctga
DBGET
integrated database retrieval system
