Semicossyphus pulcher (California sheephead): 138600420
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Entry
138600420 CDS
T10596
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03020
RNA polymerase
spul03420
Nucleotide excision repair
Brite
Enzymes [BR:
spul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
138600420
Transcription machinery [BR:
spul03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
138600420
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
138600420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138600420
NCBI-ProteinID:
XP_069527943
LinkDB
All DBs
Position
Unknown
AA seq
1890 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPSIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKF
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNRLRRNEQSRAAAHV
IAEDVKLLQFHVATMVDNELPGLPRQKYGRPLKSIKQRLKGKEGRVRGDLMRKRVDFSAR
TVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNINRLQELVRRGNSKYPGAKYIFRDNG
DRIDLRSNPKPSDLHLQTGYKVERHMCDGDIVVFNRQPTLHKMSMMGHRVRILPWSTFRL
NLSVTTPYNANFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA
VRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINVIR
THSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDI
TRLFYSNIQTVVNNWLLMEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNE
LEPTPGNTLRQTFENQVNRILNDVCDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIAQV
IAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPKGRGFVENSYLAGLTPTEFFFHAMGGR
EGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGMAGENVEFQ
NVATLKPSHKAFEKKFKFDCTNERGLRWMLQEDVVKDVLTNAHVQSALEREFDKMKEDRE
VLRAIFPTGNSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVDGVHELSKKLVIVN
GEDPLSRQAQQSATLLFNIHLRSTLCSKRMTEEFRLTTEAFDWLLGEIETKFNQSIVHPG
EMVGALAAQSLGEPTTQMTLNTIHYAGISAKDVTLGVPRLKELINISKRPKTPSLTVFLL
GQATRDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDV
TRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGLGDDLNCIFNDNNAEKLVLRIRVMNS
DENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE
DGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYH
VISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVNVLMEASC
HGESDPLKGVSENIMLGQLAPAGTGCFDLLLDAENCKHGMEIPTNKPDISVAGPTGMFFS
TVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASDFSPGYSPA
WSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPHSPGGCTPQSPGYSPTSPSYSP
TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPASPN
YTPTSPNYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPT
SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKNSHTSPTYSPTTPKYSPTSPTYSPTSPTY
TPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDD
SDEGEQLMSYGGEEEEAEETPSPHRKDSFF
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctctggcgacagtgcatgcccattgcgcacgattaagagagttcaa
ttcggcatcatcagcccagatgaacttaaacggatgtcagttacagaagggggaatcaaa
taccccgaaacaacagaaggaggacgtcctaaacttggtggccttatggacccaagacaa
ggggtcatagaacgatccggaagatgtcagacatgtgcaggcaacatgacagaatgtcca
ggccactttggacacatagaactggcaaagccagttttccatgtcggcttcataacaaag
ataatgaaggttcttcgatgtgtctgcttcttttgctctaagctattagtggattctaac
aatccaaagatcaaagacatcctgataaaatctaaagggcagcccaggaagcgtttgact
cacgtttatgagttgtgcaaagggaaaaacatctgtgaaggaggagaggagatggacaac
aaatttggaatggaacaacaggagacagaggaggacatcaccaaggagaagggccacggt
ggctgcgggcgctaccagccgagcatcagacgctctggcttggagctcttcgctgagtgg
aagcacgttaatgaggattcgcaggagaagaaaatcctgctgagcccagagcgtgtgcac
gagatcttcaagcgcatctcagatgaggaggacgtcatcttgggcatggaccccaagttc
tcccgaccagaatggatgattgtaactgtgttgcctgtgcctccactggctgtgaggccc
gctgtagtcatgcagggctctgctcgcaaccaggatgacttgacccacaaacttgctgac
atcgtcaaaatcaacaaccggctgagaagaaacgagcagagcagagcggctgctcacgtc
atagctgaggatgtcaaactgcttcagttccatgttgccaccatggtggacaacgagttg
ccaggcctgccgaggcaaaagtacggtcgccctctcaaatccataaaacagcgtctaaag
gggaaggaggggcgagtccgaggtgacctgatgaggaagcgtgtggacttctcggcccga
actgtcatcaccccggaccccaatctgcaaatcgaccaagtgggcgtaccacgatccatc
gcagccaacatgaccttcccagaaatcgtcacaccctttaacatcaacagactacaagag
ctggtgcgaagagggaacagcaagtacccaggcgccaaatacatcttccgcgacaatgga
gacagaattgacctgcgatccaaccccaaaccaagtgaccttcatctgcagactggctac
aaggtggaaagacacatgtgcgatggcgacattgtcgtcttcaaccgacagcctacacta
cataaaatgtccatgatggggcacagagttcggattctgccgtggtccacatttcgactc
aacctcagtgtgacaaccccatacaatgctaactttgacggggatgagatgaacctccac
ctccctcagtccctggagacgagggcagagatccaggaactggccatggtgccgcgtatg
atcgtcactccccagtccaacaggcctgtcatgggtatcgtgcaggacacgctcacagcc
gtccgcaaattcaccaaaagagacgtcttcttagagaggggtgaagtgatgaacctcctc
atgttcctgtccacatgggacgggaaagtgcctcagccggccatcctcaagccgcgtcct
ctgtggacgggaaagcagatcttcagcctcatcattcctggtcacatcaatgtgatccgc
acacacagcacccacccggacgaagaagacagcggcccttacaaacacatctcacccggg
gacacgaaggtcatagtggagaacggtgagttgatcatgggaatcctgtgcaagaaatct
ctgggaacgtcagccgggtccctcgtccacatctcctacctggagatgggccacgacatc
accagactcttctactccaacattcagactgtggtcaacaactggctgctcatggagggt
cattccattggtattggggactccattgctgatgccaagacgtacctcgacatccagaac
accatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaacaacgag
ctggagccgacccccggtaacaccctgaggcagacctttgagaaccaggtgaatcgtatc
ctgaacgacgtttgtgacaaaacgggatcctccgcccagaagtctctgtctgagtacaac
aacttcaagtccatggtggtggctggttccaaaggatcaaagattaacatcgcacaggtt
attgccgtggtggggcagcagaacgttgagggtaaacgaatccccttcggcttcaaacac
cgcacgctgcctcacttcatcaaggatgactacggtcctaaaggcagaggctttgtggag
aactcctacctggccggtttgacgccaacagagttcttcttccacgccatgggaggcaga
gagggtctgatcgacacggctgtcaagactgctgagactggttacatccagcgtcgtctg
atcaaatctatggagtcggtgatggtgaagtacgacggcacggtgcgtaactccatcaac
caggtggttcaactgcgttacggtgaggacggcatggcaggagagaacgttgagttccaa
aatgtggcgacgctcaaaccctcacacaaggcgtttgaaaagaagttcaagtttgattgc
accaacgagcgagggctgaggtggatgctccaggaagacgtggtgaaagacgtcctgaca
aatgcccacgtgcagagtgccttggagagggagtttgacaaaatgaaggaggacagggag
gtcctgcgagccattttccccactggcaacagtaaggtggtgctgccatgcaacttggcc
agaatgatttggaacgctcagaagattttccgcatcaacactcgaaccccaacagacctc
aatcctctacgggtggtcgacggtgttcatgagctgagtaagaagctggtgatcgtgaac
ggtgaagatccgctgagcagacaggcgcagcagagcgccaccctgctcttcaacatccac
ctgcgctccacgctctgctccaaacgcatgaccgaggagttccgcctgaccacggaggcg
ttcgactggctgctgggagagatcgagaccaaatttaaccagtccatcgtccacccaggt
gagatggtcggcgctctggctgctcagtcgctgggagagcctaccacccagatgaccctc
aacactatccactacgccggtatctcagccaaggacgtaacgctgggtgtgcctcgtctg
aaggagttgatcaacatctccaagaggcccaagacaccctcgctgactgtgttcctgctg
ggtcaggctacacgcgacgctgagagggcaaaggacatcctgtgtcgactggagcacacc
acactgcgaaaggtgacggcgaatacagccatctactacgacccgaaccctcagaacacg
gtggtggccgaggaccaggagtgggtgaacgtgtactatgagatgcccgactttgatgtg
acgcgcatctcaccgtggctgctgcgcatcgagctcgaccgcaaacacatgactgatcgc
aagctgactatggagcagattgcagagaagatcaacgcaggtttgggagatgatctgaac
tgtattttcaatgacaacaacgctgagaagctcgtcctgcgaatcagagtcatgaacagc
gatgagaacaagttccaagaggatgaggaggtggtggacaaaatggacgacgacgtgttc
ctcaggtgcatcgagtccaacatgctgacggacatgaccctgcagggcatcgagcagatc
agcaaggtgtacatgcacttgccccagactgacaataagaagaagatcatcatcacagag
gacggagagttcaaggccctgcaggagtggatcctggagacggacggagtgagcctcatg
agggtcctcagcgagaaggacgtagatcctgtcagaaccacctccaacgacatcgtggag
atcttcacggtgttgggtattgaagccgtgcgaaaggccctggagagggagttgtaccac
gtcatctcctttgacggctcctacgtcaactaccgtcacttggctctgctctgcgacacc
atgacgtgccgcggtcacttgatggccatcacgcgtcacggcatcaaccggcaagacaca
ggaccgctcatgaagtgttcctttgaggagacggtgaatgtgttgatggaggcgtcatgc
cacggtgagagtgatcccttgaagggtgtatcggagaacatcatgctcggccagctcgcc
cccgccggtacaggatgcttcgacctgctgttggatgctgagaattgtaaacatggcatg
gagattcctacaaacaaacctgacatcagcgttgcaggacccactggaatgttcttcagc
accgtgccgagtcccatgagtggtatgtcacctgccatgaccccctggaacacgggagca
acacctgcatacggtgcctggtcccccagtgttggaagcggcatgacacctggagcagct
ggtttctctcccagtgcggcatcagatgcaagtgacttctctccaggctactccccagcc
tggtctcccactcctgggtctccagggtctccagggcctgcaagcccatacatcccatct
ccaggtggagccatgtcacccaactactcccccacctccccagcctacgagcctcactct
cccggtggctgcaccccacaaagccccggctactccccaacgtctccctcctactccccc
acttctccttcttactcccccaccagccccaactacagcccgacatccccttcctactcg
cccacctcacccagttactccccaacctcgccttcctattctcctacgtctccatcttat
tcaccaacgtctccctcctactccccaacatcaccgtcttactccccagcctctccaaac
tacaccccgaccagccccaactactcccccacctctccctcttattcccctacctcccca
tcttactcgccctccagtccacgctacacccctcagtcacccacttacacacccagctct
ccttcatacagccccagctccccctcctactcccccacctcccccaaatacaccccaact
tcaccctcatacagccccagctccccggagtatactcccacctctcccaaatactccccc
acctcgccgaagtactccccgacatctccgaagaactcgcacacctctcccacttactcc
ccaacaactccaaaatacagccccacctctcctacctactcccccacctcccctacctac
acccctaccagccccaaatactccccaacctctcctacttactccccaacttcacccaag
tactctcccacgtctcctacatactcaccaactagtcctaaaggctccacgtacagccca
acttcgcccggatacagccccacctccccgacctacagcccggccatcagccccgatgac
agcgacgagggggaacaactgatgagctacggaggagaagaggaggaagctgaggaaacc
ccgtcacctcaccggaaggacagcttcttttaa
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integrated database retrieval system
