Semicossyphus pulcher (California sheephead): 138600948
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Entry
138600948 CDS
T10596
Symbol
focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
138600948 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
138600948
NCBI-ProteinID:
XP_069528611
LinkDB
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Position
Unknown
AA seq
1813 aa
AA seq
DB search
MAEGLKIRFDFQSPVIQAQTVRSLVAAVLKEKGPNGQIAQSSTQGPALEALWQQCSSDSA
LVRSSCCDAVVLLVDQGHADLHYVLNSVLNLLPSARNVQGLMKVMGRLLQVQADQRDTGA
HFTCPYSIRNSPHPFITALENRADCWPALLLEIDDFIQQAADRNEAAYVTMLAPFLRYLY
CEPQRQPQHGLLRHSLLRVLLHKHPAAGSDLQSQSQGQTSSVSDSLLLCLCQLVPHMQVD
SVGAVLELCGFVDALLLGLLSSSDERWRSERVGLLLQLLCACQRCLTLNGDCRPLLNSVH
QLLPACQQELPLDELLMGVALLLLEAPAAQQTSLLSLALSLVPEESELSPWLSPVLVLPV
LQLLSCSSLTEALADPRIHTVNQELSHKLLHRISRGTDTPGQTSPPLALPLSSWYSELSV
AVSVLRRLADDPAAAADWLLAVSSALSLSSSQLRLCSLSLIVTHVIVSGQEDICQLALNA
SQAVAAADPCQVPSLLPVLLFKLGREKNPVLAHAVLNCLPNLGTHKLCVPMVLQTLHMLA
STPKLRAVAMRLMTVLWKKQDRVYPELQRLLGQQDSRVVVGRDAQWEQILARAACIRDIC
RERPYQHGGDMLAAIKLTLNQCTRPDMATPAALALQGLQELCRTEVVDIVSTWRSVSPEL
GCDSRPLMVKATAELLALVPQLVVKSEQYEKLKEEVVSFLWSYSASKDPEVASCGFRALA
EFPEDVHTINLLPEAARPATKLPESEEDEQGTDKTEEEEEEKDLSVPGSSYVKLMALTPV
SVLPAFELFLTSLVKQEMSKMPRGVYFSALRGGNLRSDQGKTVAGIPSFMLKTYEKNKQP
GLKPGLAAGLLLCYELPVQTDREGKPIDRFLVSRSRSHQQTLSALIHEVNIQPSEWHRAL
LLPQAWRGFMSRAFHAVLQGRRADLEMQQKQGKEDPQELQYKQHCAWLWARDQLTDVIKA
ATKDSPVVQGNSILALSGLAAVLAKYESNLPADGDGSLGAGPEFVPTSSWLSIVLNTLLS
ISSSSYKASGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDGLVQVLSA
LRAGLPGSPTADDSQAVQFHSGLALGMVLSSLQHQRLSDVSVQKDAELLLSSLEALESCS
FNPDLEYNTGCVLGLALVLSALCSSGQTDQHVHVTQTLDKLLSSLQDSSGQGRMLQEVLA
YSVACVCVSAFSGGLIDAAKAEEVMNTLRTLTEESQQTPGFSLALGLVVHGLSASGHGKA
EDIHPRLLAAWIKILLAEGCPTMQRLAAVNGLVALVGSESYLIQLTSEMELSSQQQSRLN
EVIRAITQIITFSGAIGLQSNSSCLVAHLHLAHMSTSHTHTAVPQDFSYLSEKSAIRSVI
DFLTEAGKKGPEFSHPAVVKAALTPLASVGSSFQYPPINWSAVLSPLMRLSFGQDVQHQC
LVLAATQAQSSQSASLFLGSWLSPPLVHSLSLQTRAHLYETLGLWMKHVAEDKLQVYVES
LGLQQFQDDLRPQRVSLCRSVLQGLAQAMALPNPPNSCWTILRSTTEKVFTSLPNHIQDE
EVDLYVGITKCLSEMSDTEIDRIARVTETQMEKTCFILAYLTSLGRVPLLSLNDIIAGVL
RGWPSRRVGWLLLQTFYQCRLATSANTGVLKRMEWLLELMGHIRNVAYGATSVTCGDAKL
ATDFLFQVFSAAVVSWGDHFMPLLLGIRDKWFPWQAGSKPQTLQHSLYGGEAFTEHALSQ
CMLGVSHSLSLLLDKEPWSSQTHKFIEWLLSITEGPVYRLSVTTISTAKAALLALKSSAE
FKKKAVWTRAYGW
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggccgagggtttgaagatacgatttgatttccaaagtcccgtcatacaagcacagacg
gtgagatctcttgttgctgctgtgctgaaggagaaaggaccaaatgggcaaatcgcacag
tcctccacacagggcccggcgttggaggctctgtggcagcagtgctcctctgattcggct
ctggtgcgttcatcctgctgcgacgctgtggtgctgctggtggatcagggacacgcagac
ctgcactacgtcctcaacagtgtgctcaacctgctgccctctgccagaaacgtccagggg
ctgatgaaggtgatgggacggctgctccaggtgcaggcagaccagagagacacaggagca
cacttcacctgtccgtactctatcaggaacagccctcacccgttcatcacagcgctggag
aacagagcggactgctggccggctctgctgctggagattgatgatttcatccagcaggct
gctgacagaaatgaagcggcctacgtcaccatgctggctcccttcctgcggtacctgtac
tgtgaacctcagagacagcctcagcacggcctcctcagacacagtcttctcagggtgctg
ctgcacaaacacccagcagctggatcagacctgcagagccagagccagggacagacctcc
tcagtgtctgacagcctgctgctctgcctctgtcagctggtgcctcacatgcaggtggac
agcgtaggggcggtgttggagctgtgtggattcgtcgacgctctgctcctgggtctcctc
tcgtcctctgacgagcgctggaggtctgagagggtggggctgctgctgcagctgctgtgt
gcctgccagcgctgcctcacgttaaacggagactgtcgacctcttcttaactcagtgcat
cagctcctgcccgcctgccaacaggagctgccattggacgagctgctgatgggcgtggcc
ctgctcctgttagaggcacctgcagctcagcagaccagcctgctcagtctggctctgagt
ttagtccctgaggagtctgagttgtccccctggttgagtccggtcctggtcctccccgtc
ctgcagctcctctcctgctcgagtctcacagaggctctggctgacccacggatacacact
gtcaaccaggagctgtctcacaagctgctccacagaatcagcagggggacggatacacct
ggacagacttctccaccgttggctctccctctcagctcctggtacagcgagctcagcgtg
gctgtgtccgtgcttcgcagactggcggacgatccagcagcagcagctgactggctgctg
gccgtcagctccgccctctccctgtcgtccagccagctccggctctgctccctcagcctc
attgtgactcatgtcatcgtctcgggtcaggaagacatctgccagctggctctgaacgcg
agccaggccgtggctgcagccgacccctgccaggtcccctcccttcttcccgtcctgttg
ttcaaactgggcagggagaagaatccggtcctggctcacgctgtgctgaactgcctgccg
aacctcgggactcataagctctgtgtgcccatggtgctgcagactctacacatgctagcc
agcacccccaagctgagagcggtggcaatgcgcctcatgactgttctgtggaagaagcag
gatcgagtgtacccggagctgcagcgtctgctgggccagcaggacagcagggtggtggtg
gggagggacgcccagtgggagcagattctggccagagccgcgtgcatcagggacatctgc
agagagaggccttaccagcatggaggagacatgttagctgccattaaactcactctgaac
cagtgcaccagaccagacatggcgaccccagctgctctcgccctgcagggactccaggag
ctgtgtcggacagaggtggttgacatcgtctccacgtggagaagtgtcagtcctgagctg
ggctgtgactctcgtcctctgatggtcaaagccacagccgagcttctggctctggttcct
cagctcgttgttaaatcagagcagtacgagaagctaaaagaggaggtggtcagcttcctc
tggagctactctgcaagcaaggacccggaggtggccagctgtggtttcagggctttggca
gagtttcctgaagatgtccacacgataaacctccttcctgaggcagcccgaccagctaca
aagctccctgaaagtgaagaggatgaacagggcacagacaagacagaggaagaagaggaa
gagaaggatctctctgtcccaggttcatcctatgtgaagctgatggctctcacccctgtc
tctgttctaccagccttcgagctcttcctcacctcgctggtgaagcaggagatgagcaag
atgccccggggggtctacttctctgccctgaggggggggaacctgcgctcggatcagggg
aaaacggtggcaggaatcccgtcgttcatgctgaagacctacgagaagaacaagcagccg
gggctgaagccgggactagcagccggcctgctgctctgctatgagcttcccgtgcagacg
gaccgtgaaggcaaaccgatagatcgtttcctcgtcagccgcagccgcagccaccagcag
accctgtcagccctcattcatgaggtgaacattcagccgtctgagtggcaccgagctctc
ctcctgccgcaggcctggagaggcttcatgagccgagctttccacgccgtcctgcagggt
cgtcgtgcagatttggagatgcagcagaaacaaggcaaagaggacccacaggagctgcag
tacaaacaacactgtgcctggctgtgggccagagatcagctgacagacgtcatcaaagct
gctacaaaggacagtcctgttgttcagggcaactccatcctggctctgagcggccttgct
gctgttctcgctaagtatgagagcaacctgcctgctgatggagacggcagcctcggggcg
ggtccagagtttgtgcccacgtccagctggttgtccatcgttctcaacacgctgctcagc
atcagcagcagcagctacaaggcctcaggacaggtgttcccgtggttcctacatcgttca
tactcaggtgagaacacagcgagtgccatcgctcgctcctgtgccagcctggccctgtcc
ctgctggttccggttctggtggtctggcagagagacggtctggtccaggtcctgtcggcg
ctgcgggccgggctgccgggttcccccaccgctgacgactcccaggccgtccagttccac
tccggcctcgcgctcggcatggtgctgtccagtctgcaacaccaacgcctcagtgacgtc
tccgttcagaaggacgctgagctcctcctcagctctctggaggctctggaaagctgctcc
ttcaaccccgacctggagtacaacaccggctgtgtgctgggtctggctctggttctgtca
gctctctgcagcagtggacagacggaccaacacgtccacgtcacacaaacactggacaaa
ctcctgtccagcctgcaggacagcagcgggcagggacgcatgctgcaggaggtcttggcg
tactctgtggcgtgtgtgtgcgtctcagccttcagcggcggtctcatagatgctgccaag
gctgaggaggtgatgaacaccctgcggaccctgaccgaggagagccagcagactccaggt
ttctccctcgctctggggttggtggtccacggcctctccgcgtccggtcacggtaaagct
gaggacatccaccctcgtctgctggctgcttggatcaagatcttacttgccgagggttgt
cccacgatgcagcgcctggctgccgtgaacggtctggtggctttagtgggatcagagagt
tacctcatccagctgacgagtgagatggagctttcctctcagcagcagagcagactgaac
gaggtgattcgagccatcacacagatcataacgttctcaggagccatcggtctgcagtct
aacagctcctgtttggtggctcatttgcatttggcccacatgtccaccagtcacactcac
acagcagtccctcaggatttcagctacctctcagagaaaagtgccatcaggtctgtgatc
gacttcctcacagaggcaggaaaaaaaggtccagagttctctcatcctgctgtcgttaaa
gcagctctgactcctctggcatcagttggatcgagtttccagtacccgcccatcaactgg
agcgctgtgctctctcctctgatgagactcagcttcggacaggacgttcagcatcagtgt
ttggttctggcagcgactcaggctcagtcctctcagagtgcgtctctgtttctgggctcc
tggctgtctccgcccctcgtgcacagtctcagtctccagacccgggctcacctgtacgag
actctgggcctgtggatgaagcacgtggctgaggacaagctgcaggtctacgtggagagt
ctgggtctgcagcagttccaggacgacctccgacctcagcgcgtgtccctgtgccgctct
gtgctgcagggcctcgctcaggccatggccctcccgaaccctccaaacagctgctggacc
atcctgcgctccaccaccgagaaggtcttcacctccctgccaaaccacatacaggatgaa
gaggtggacttatacgttggaatcaccaaatgtctctctgagatgtctgatacagagatc
gaccgaatcgctcgggtcacagagactcagatggagaagacctgcttcatcctggcgtac
ctgacctccctaggcagggtccccctcctcagtctcaatgacatcatagccggcgtgctt
cgtggttggccgagccgcagagtcggctggctcctcctgcagacgttttaccagtgtcgc
ctggccaccagcgccaacacaggtgttctgaaacggatggagtggctgctcgagctgatg
ggacacatccgaaatgtcgcctatggtgcaacctctgtaacgtgtggagacgccaaactg
gccacagacttcctgtttcaggtgttctctgctgctgtagtttcctggggcgaccacttc
atgcccctcctcctcggcatcagggacaagtggttcccatggcaagccggctccaagccc
caaactctgcagcacagtctgtacggaggggaggcgttcactgagcacgctctgtcccag
tgcatgctgggagtgtcccacagtttgtccctgctgctggacaaagagccctggagcagc
cagacgcacaagttcatagagtggctcctcagcatcacagaaggtcctgtatacagactg
tcagtcacaaccatcagcacggccaaagccgccctgctggccctgaagtcctccgccgag
ttcaagaagaaagccgtgtggacccgagcgtacggctggtag
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integrated database retrieval system
