Semicossyphus pulcher (California sheephead): 138600986
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Entry
138600986 CDS
T10596
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138600986
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138600986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138600986
NCBI-ProteinID:
XP_069528651
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MEIAEARGASTCVEKMEKEVAPQKRQYHRATVLNIISSLCSVASIAFCVFLCINTADIKN
RVVDLESGNGEHTFIRAPGYSMDDFNSLIEQRVDELLSQRSYENFVKIRTARQTSPECNC
PPGPPGKRGRRGRNGEPGPPGPPGTKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGEPGDTGPMGPEGPEG
PKGSLGLPGVPGVDGLKGDVGIPGLDGIPGGKGEMGERGEKGDMGEDGTKGDIGEKGDAG
SSAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGD
HGPPGKGERGDLGPLGPKGSQGESGTPGPKGSKGETGDTGDLGSIGPKGPPGQKGDQGAT
EIIDYNGNIQEALQKITTLTVTGPPGPPGPIGPHGFKGDRGMPGLPGLDGERGYKGSKGD
MGMPGASGDKGTTGLPGLPGINGMKGDKGDSGLPGPQGPSISGPPGPPGPHGPPGPMGPH
GFPGPKGEPGLHGVKGIRGESGHKGDRGPLGLPGTDGPPGPAGPAGPKGDIGERGAQGEP
GPRGPYGLPGAAGTPGLDGLPGLRGEKGDLGERGEKGFRGFKGEKGEPGQPGLDGLDAPC
QLGPDGLPMPGCWQKGVTPWLVA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatctacgtgcgtggaaaaaatggagaaagaagtg
gcgcctcagaagcgacaatatcaccgcgcaacagtgctgaacataatctcgtctttatgt
tcggtggcgtccatcgcgttttgcgtttttctgtgcattaacacagctgatatcaagaac
cgggttgtggatttggagagtgggaatggcgagcacacctttatccgtgctcccggttac
tccatggatgactttaattcactcattgaacaaagagtggacgagctgctttctcagcgc
tcctatgaaaattttgtgaagattcggactgcaagacaaacatcacctgaatgcaactgc
cctccaggacctccaggaaagcgaggaagaagaggccgcaacggagaacctggacctcct
ggccctcccggtacaaagggtgaaaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcggctc
attaagggagatcaagggcaagcaggaccacctgggcctcctgggccgccgggtcctcct
gggccgagggggcctccaggggacactgggaaagatggacccagaggcgtacccggtcta
ccaggggatccaggggagcccggagacacaggacccatggggccggaggggccggagggg
ccgaagggttcactcgggcttcctggcgtcccaggtgttgacggactaaagggggatgtt
ggcatcccaggattggacggtatccccggaggcaagggcgagatgggcgagcggggtgaa
aagggcgatatgggtgaagatggaacgaaaggtgatataggagagaagggagatgcaggc
tcctctgcagcaggcatcaagggcgaacccggagagcctggacgaagtggacacaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgaacccggattcctc
ggcccccagggagagccagggcttcccggactcccaggaaccaagggcgagagaggcgac
cacgggccaccaggaaaaggtgaaagaggagacctgggaccccttggaccaaagggttca
caaggagagtctgggacacctggtcctaaagggtcaaagggggagactggagatacagga
gacttgggatctattggcccaaagggccctcctggacagaaaggagaccaaggagcgact
gaaatcatcgactacaacggaaacattcaggaggctttacagaagattaccactcttaca
gtgacgggtcctcctggacctcctgggccgataggaccacacggcttcaagggcgatcgt
ggtatgcctggtctgcctggactggatggtgaaagaggttacaaaggttcaaaaggtgac
atggggatgccgggagcttcaggggataaaggaacaactggtttgcccggcctacctggt
atcaacgggatgaaaggcgacaagggagactcagggctacctggtcctcaaggtccttca
atcagcggtcctccagggccacctgggccccatggacctccaggacccatgggcccccat
ggtttccctggaccaaagggggagcctggtttgcacggtgtgaagggtattcgaggggaa
tcaggacacaaaggggaccgtggacccctgggtctccctggcactgatgggcctccgggt
ccagctggtccagctgggccgaagggtgacatcggtgagagaggagcgcaaggcgagcca
ggaccgaggggaccttatggacttcctggagcagccggaacaccgggcttggatgggttg
ccaggcttaaggggagagaaaggcgaccttggggaaagaggagaaaagggtttccgggga
tttaagggtgaaaagggggaaccagggcagccaggtctggacgggctggatgccccatgc
caattgggcccggatggattaccaatgcctgggtgctggcagaagggagtcacgccgtgg
ctggtagcctga
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