Semicossyphus pulcher (California sheephead): 138603131
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Entry
138603131 CDS
T10596
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138603131 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spul03019
]
138603131 (xab2)
03041 Spliceosome [BR:
spul03041
]
138603131 (xab2)
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138603131 (xab2)
Spliceosome [BR:
spul03041
]
Complex B
Other components
Prp19-related factors
138603131 (xab2)
Complex C
138603131 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
TPR_1
SNAP
Motif
Other DBs
NCBI-GeneID:
138603131
NCBI-ProteinID:
XP_069530914
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MPSLNGKPDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNASKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCINEPPYEEVNNCHERALVFMHKMPRIWIDYCQFLVGQCK
ITKSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENTEDYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDDDTDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVETDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKLKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDDDDEGQGPEEVQLEQKSVP
TAVFGGLKED
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaacccgatgttatatttgaggacgatgatctgccttacgaa
gaggagattatcaggaacccatactcggtcaagtgttggatgcgttacatcgagttcaaa
cagaatgcatctaaatctaccctcaacatgatctatgagcgggctttgaaagaattgccc
ggcagctataagctgtggtacaattatctcagagagaggcgaaaacaagtcaaagggaaa
tgtatcaatgaaccaccctatgaagaggtcaacaattgccatgaaagggcactggtgttc
atgcacaagatgcctagaatttggattgattattgccagttccttgtgggtcagtgcaag
atcacaaaaagccggcaaacatttgaccgtgcactcagagctcttcctgttacccagcac
ccacgcatctggcctctgtatctccgctttgtccgtaacctgccgctgccagaaacagcc
atccgagtgtaccgcaggtaccttaagctttctccagagaatacagaggattacatagac
tacttaaggtctgttggccgcttggatgaagcagctgtgcgactagcagctgttgtcaat
gacgaaagctttgtgtccaaagagggcaagtctaactatcaactgtggcatgagttatgc
gacttgatctctcagaaccctgataaggtgacctcgctgaatgtaggagccatcatccga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgttctttagctgactat
tacatcaggagtggtcactttgagaaggcccgtgatgtgtatgaagaggctatcctaacg
gtggtaaccgtaagggatttcacacaagtgtttgatagttatgcccagtttgaagagagc
atgatcgcagcaaagatggagaccactgctgagatggggaaggatgaagatgatgacact
gacatggagcttagactggcccgctttgagcagctgatagcccggcggcccctccttttg
aacagtgtgctgttgcggcagaaccctcataatgtccatgagtggcacaagcgggtaaaa
ctctatgagggcaatccgcgacagatcatcaacacctacactgaggcagtacagactgtg
gatccaatgaaggccacagggaagcctcactctctctgggtttcattcgctaaattttat
gaggaaaatgagcagctcgatgatgccaggaccatttttgagaaggctaccaaggtgaac
tataagcaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggagctacgc
catgaaaactatgaccaggctctgcgcatactgaggaaagctacagccatcccgtccaag
aaggctgagtactttgatgcatctgaacctgtccaaaacagagtctacaagtccttgaag
gtttggtctatgcttgcagacttggaagagagtctgggaactttccagtcaacgaaagct
gtgtacgaccgcattattgacctccgcattgccacgccacagatcataatcaattatgcc
atgttccttgaagaacacaactattttgaagaaagcttcaaagcatatgagcgtggtatc
gctctcttcaggtggccaaatgtttacgacatctggaacacttacctcaccaagttcatt
gatcgttatggaggcaagaagctggaaagagccagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccatttatctgttgtatgccaaattggaggaggga
tatgggttggcacgacatgccatggctgtctatgaaagggcaacgcaggctgtcgaaacc
gatgagcggcatcacatgttcaatatctacatcaagagagcagctgaaatttacggagtc
acatataccagagcaatttaccagaaagctatcgaggttcttcctgatgagcatgcaagg
gatatgtgtctgcgatttgctgacatggagagtaaattgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgaccccagggtgacagccaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaggacacaattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaggtcaactttatgtcttcgcagatg
atgaaggccacaacgagctccacaggtactgtgtcagatctcgctccaggccaaatggga
attgatgatatgaagatgttggagcagaaagcacagcaacttgcagcagaggctgagcag
gataaactcaagcccaaagagaagattctgtttgtcaggagtgacacatctcgcagtgag
ttggcagagctttccaaacaagccaatcctgatgaaatcgacatagatgatgacgatgag
gatgacgatgatgaaggccagggaccagaggaggtgcagcttgaacagaagagtgtcccc
acagctgtttttggaggtctaaaagaagattga
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